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Add updated web site from JWS2 branch
[jabaws.git] / website / tests / clustengine / compbio.runner.clustal.ClustalWParametersTester.html
diff --git a/website/tests/clustengine/compbio.runner.clustal.ClustalWParametersTester.html b/website/tests/clustengine/compbio.runner.clustal.ClustalWParametersTester.html
new file mode 100644 (file)
index 0000000..1b2d8f5
--- /dev/null
+++ b/website/tests/clustengine/compbio.runner.clustal.ClustalWParametersTester.html
@@ -0,0 +1,406 @@
+<html>
+<head>
+<title>TestNG:  compbio.runner.clustal.ClustalWParametersTester</title>
+<link href="../testng.css" rel="stylesheet" type="text/css" />
+<link href="../my-testng.css" rel="stylesheet" type="text/css" />
+
+<style type="text/css">
+.log { display: none;} 
+.stack-trace { display: none;} 
+</style>
+<script type="text/javascript">
+<!--
+function flip(e) {
+  current = e.style.display;
+  if (current == 'block') {
+    e.style.display = 'none';
+    return 0;
+  }
+  else {
+    e.style.display = 'block';
+    return 1;
+  }
+}
+
+function toggleBox(szDivId, elem, msg1, msg2)
+{
+  var res = -1;  if (document.getElementById) {
+    res = flip(document.getElementById(szDivId));
+  }
+  else if (document.all) {
+    // this is the way old msie versions work
+    res = flip(document.all[szDivId]);
+  }
+  if(elem) {
+    if(res == 0) elem.innerHTML = msg1; else elem.innerHTML = msg2;
+  }
+
+}
+
+function toggleAllBoxes() {
+  if (document.getElementsByTagName) {
+    d = document.getElementsByTagName('div');
+    for (i = 0; i < d.length; i++) {
+      if (d[i].className == 'log') {
+        flip(d[i]);
+      }
+    }
+  }
+}
+
+// -->
+</script>
+
+</head>
+<body>
+<h2 align='center'>compbio.runner.clustal.ClustalWParametersTester</h2><table border='1' align="center">
+<tr>
+<td>Tests passed/Failed/Skipped:</td><td>0/8/0</td>
+</tr><tr>
+<td>Started on:</td><td>Mon Dec 21 18:09:47 GMT 2009</td>
+</tr>
+<tr><td>Total time:</td><td>2 seconds (2219 ms)</td>
+</tr><tr>
+<td>Included groups:</td><td></td>
+</tr><tr>
+<td>Excluded groups:</td><td></td>
+</tr>
+</table><p/>
+<small><i>(Hover the method name to see the test class name)</i></small><p/>
+<table width='100%' border='1' class='invocation-failed'>
+<tr><td colspan='3' align='center'><b>FAILED TESTS</b></td></tr>
+<tr><td><b>Test method</b></td>
+<td width="10%"><b>Time (seconds)</b></td>
+<td width="30%"><b>Exception</b></td>
+</tr>
+<tr>
+<td title='compbio.runner.clustal.ClustalWParametersTester.testArguments()'>testArguments</td>
+<td>0</td>
+<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979987799825706 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testArguments(ClustalWParametersTester.java:137)\r
+... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace24166053", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
+<div class='stack-trace' id='stack-trace24166053'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979987799825706 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testArguments(ClustalWParametersTester.java:137)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
+       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
+       at java.lang.reflect.Method.invoke(Method.java:597)\r
+       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
+       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
+       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
+       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
+       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
+       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
+       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
+       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
+       at org.testng.TestRunner.run(TestRunner.java:486)\r
+       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
+       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
+       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
+       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
+       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
+       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
+       at org.testng.TestNG.run(TestNG.java:751)\r
+       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
+       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
+</pre></div></td>
+</tr>
+<tr>
+<td title='compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues()'>testConstrainedParametersMaxValues</td>
+<td>0</td>
+<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979988961908025 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues(ClustalWParametersTester.java:151)\r
+... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace30308427", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
+<div class='stack-trace' id='stack-trace30308427'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979988961908025 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues(ClustalWParametersTester.java:151)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
+       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
+       at java.lang.reflect.Method.invoke(Method.java:597)\r
+       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
+       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
+       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
+       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
+       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
+       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
+       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
+       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
+       at org.testng.TestRunner.run(TestRunner.java:486)\r
+       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
+       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
+       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
+       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
+       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
+       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
+       at org.testng.TestNG.run(TestNG.java:751)\r
+       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
+       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
+</pre></div></td>
+</tr>
+<tr>
+<td title='compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues()'>testConstrainedParametersMinValues</td>
+<td>0</td>
+<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#70979988327544395 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues(ClustalWParametersTester.java:144)\r
+... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace9949215", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
+<div class='stack-trace' id='stack-trace9949215'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#70979988327544395 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues(ClustalWParametersTester.java:144)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
+       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
+       at java.lang.reflect.Method.invoke(Method.java:597)\r
+       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
+       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
+       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
+       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
+       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
+       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
+       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
+       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
+       at org.testng.TestRunner.run(TestRunner.java:486)\r
+       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
+       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
+       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
+       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
+       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
+       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
+       at org.testng.TestNG.run(TestNG.java:751)\r
+       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
+       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
+</pre></div></td>
+</tr>
+<tr>
+<td title='compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues()'>testConstrainedParametersRandomValues</td>
+<td>0</td>
+<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#46979989070571443 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues(ClustalWParametersTester.java:164)\r
+... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace25934938", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
+<div class='stack-trace' id='stack-trace25934938'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#46979989070571443 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues(ClustalWParametersTester.java:164)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
+       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
+       at java.lang.reflect.Method.invoke(Method.java:597)\r
+       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
+       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
+       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
+       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
+       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
+       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
+       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
+       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
+       at org.testng.TestRunner.run(TestRunner.java:486)\r
+       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
+       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
+       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
+       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
+       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
+       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
+       at org.testng.TestNG.run(TestNG.java:751)\r
+       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
+       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
+</pre></div></td>
+</tr>
+<tr>
+<td title='compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters()'>testDefaultParameters</td>
+<td>0</td>
+<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#38979988048124217 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters(ClustalWParametersTester.java:105)\r
+... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace11854491", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
+<div class='stack-trace' id='stack-trace11854491'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#38979988048124217 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters(ClustalWParametersTester.java:105)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
+       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
+       at java.lang.reflect.Method.invoke(Method.java:597)\r
+       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
+       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
+       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
+       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
+       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
+       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
+       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
+       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
+       at org.testng.TestRunner.run(TestRunner.java:486)\r
+       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
+       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
+       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
+       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
+       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
+       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
+       at org.testng.TestNG.run(TestNG.java:751)\r
+       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
+       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
+</pre></div></td>
+</tr>
+<tr>
+<td title='compbio.runner.clustal.ClustalWParametersTester.testOptions()'>testOptions</td>
+<td>0</td>
+<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979988189879815 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testOptions(ClustalWParametersTester.java:122)\r
+... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace26460367", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
+<div class='stack-trace' id='stack-trace26460367'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979988189879815 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testOptions(ClustalWParametersTester.java:122)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
+       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
+       at java.lang.reflect.Method.invoke(Method.java:597)\r
+       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
+       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
+       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
+       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
+       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
+       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
+       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
+       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
+       at org.testng.TestRunner.run(TestRunner.java:486)\r
+       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
+       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
+       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
+       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
+       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
+       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
+       at org.testng.TestNG.run(TestNG.java:751)\r
+       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
+       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
+</pre></div></td>
+</tr>
+<tr>
+<td title='compbio.runner.clustal.ClustalWParametersTester.testParameters()'>testParameters</td>
+<td>0</td>
+<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979987926880363 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testParameters(ClustalWParametersTester.java:129)\r
+... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace3932167", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
+<div class='stack-trace' id='stack-trace3932167'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979987926880363 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testParameters(ClustalWParametersTester.java:129)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
+       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
+       at java.lang.reflect.Method.invoke(Method.java:597)\r
+       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
+       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
+       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
+       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
+       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
+       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
+       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
+       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
+       at org.testng.TestRunner.run(TestRunner.java:486)\r
+       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
+       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
+       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
+       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
+       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
+       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
+       at org.testng.TestNG.run(TestNG.java:751)\r
+       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
+       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
+</pre></div></td>
+</tr>
+<tr>
+<td title='compbio.runner.clustal.ClustalWParametersTester.testPresets()'>testPresets</td>
+<td>0</td>
+<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#85979987545393788 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testPresets(ClustalWParametersTester.java:231)\r
+... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace26156414", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
+<div class='stack-trace' id='stack-trace26156414'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#85979987545393788 is inaccessible or does not exist!\r
+       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
+       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
+       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
+       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
+       at compbio.runner.clustal.ClustalWParametersTester.testPresets(ClustalWParametersTester.java:231)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
+       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
+       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
+       at java.lang.reflect.Method.invoke(Method.java:597)\r
+       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
+       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
+       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
+       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
+       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
+       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
+       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
+       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
+       at org.testng.TestRunner.run(TestRunner.java:486)\r
+       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
+       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
+       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
+       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
+       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
+       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
+       at org.testng.TestNG.run(TestNG.java:751)\r
+       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
+       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
+</pre></div></td>
+</tr>
+</table><p>
+</body>
+</html>
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