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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / j11lib
2024-08-26 Ben SoaresJAL-3631 Create an installer.properties file in the... commit | commitdiff
2024-08-16 Ben SoaresJAL-3631 Fix EnvConfig.getUserAppdir() in getdown when... commit | commitdiff
2024-07-31 Ben SoaresJAL-3631 Changes to Getdown to call getdown-launcher... commit | commitdiff
2024-07-29 Ben SoaresJAL-3631 Getdown acknowledges in output when only perfo... commit | commitdiff
2024-07-18 Ben SoaresJAL-3631 Tweaks to getdown for updating and user appdir... commit | commitdiff
2024-07-18 Ben SoaresJAL-3631 Allow override of appDataPath with property... commit | commitdiff
2024-07-12 Jim Proctershorter hashes - just first seven characters.. like... commit | commitdiff
2024-07-12 Jim ProcterJAL-3631 updated getdown jars commit | commitdiff
2024-07-12 Jim ProcterJAL-3631 updated getdown jars commit | commitdiff
2024-07-03 Jim ProcterJAL-3631 rebuild getdown jars after merge to develop commit | commitdiff
2024-07-01 Ben SoaresJAL-3631 Harden defence against looping getdown relaunc... commit | commitdiff
2024-06-29 Ben SoaresJAL-3631 JVL file with appbase now relaunches getdown commit | commitdiff
2024-06-28 Ben SoaresJAL-3631 Change in user path for locally installed... commit | commitdiff
2024-06-28 Ben SoaresJAL-3631 Change to Windows user-space default location... commit | commitdiff
2024-06-28 Ben SoaresJAL-3631 Fixed a getdown Exception when launching Jalvi... commit | commitdiff
2024-06-27 Ben SoaresJAL-3631 spelling correction commit | commitdiff
2024-06-27 Ben SoaresJAL-3631 Log4j logging to .jalview.log file when reques... commit | commitdiff
2024-06-25 Ben SoaresJAL-3631 JAL-3384 Install4j launch now redirects STDOUT... commit | commitdiff
2024-06-25 Ben SoaresJAL-3631 Use the icon file passed by install4j if a... commit | commitdiff
2024-06-24 Ben SoaresJAL-3631 Check Implementation-Version of getdown-launch... commit | commitdiff
2024-06-21 Ben SoaresJAL-3631 updated getdown jars commit | commitdiff
2024-06-21 Ben SoaresJAL-4409 Add two empty args to getdown call from instal... commit | commitdiff
2024-06-19 Ben SoaresJAL-3631 Rename/rationalise informational system proper... commit | commitdiff
2024-06-18 Ben SoaresJAL-4358 slight improvement to detecting desktop creati... commit | commitdiff
2024-06-18 Ben SoaresJAL-3631 Substantial additions to Getdown (through... commit | commitdiff
2024-06-14 Ben SoaresJAL-3631 JAL-4104 More consistent system property names... commit | commitdiff
2024-06-13 Ben SoaresJAL-3631 New Installer icons. Getdown check that the... commit | commitdiff
2024-06-12 Ben SoaresJAL-3631 Spot system property triggers in getdown to... commit | commitdiff
2024-06-07 Ben SoaresMerge branch 'develop' into improvement/JAL-4409_implem... commit | commitdiff
2024-06-06 Ben SoaresJAL-4072 Add zip-slip check in getdown commit | commitdiff
2024-06-06 Ben SoaresJAL-4358 Add the JALVIEW: CREATED DESKTOP line to java... commit | commitdiff
2024-06-05 Ben SoaresMerge branch 'develop' into bug/JAL-4421_customise_volu... commit | commitdiff
2024-06-04 Jim ProcterMerge branch 'improvement/JAL-4409_implement_extra_sche... commit | commitdiff
2024-05-29 Ben SoaresJAL-4409 Allow more URI schemes (e.g. file) to filter... commit | commitdiff
2024-05-28 Ben SoaresJAL-4409 JAL-4160 Don't let getdown turn jalviewX:... commit | commitdiff
2024-05-21 Ben SoaresJAL-4409 Adjust usage of HttpUtils.equivalentJalviewURL... commit | commitdiff
2024-05-17 Ben SoaresJAL-4420 Add some debugging statements commit | commitdiff
2024-05-17 Ben SoaresJAL-4409 Checking getdown jars up to date commit | commitdiff
2024-05-17 Ben SoaresJAL-3409 Add newline back into Buffered Reader in getdo... commit | commitdiff
2024-05-16 Ben SoaresJAL-4409 Added remote JVL files for Linux/Windows commit | commitdiff
2024-05-16 Ben SoaresJAL-4409 Added multiple file open to getdown. Added... commit | commitdiff
2024-05-16 Ben SoaresJAL-4409 more places to check for jalviewd:// commit | commitdiff
2024-05-16 Jim ProcterMerge branch 'develop' into feature/JAL-4159_pasimap commit | commitdiff
2024-05-15 Ben SoaresJAL-4409 extra schemes now opening correctly in macos commit | commitdiff
2024-05-15 Ben SoaresJAL-4409 Updated getdown classes commit | commitdiff
2024-05-10 Ben SoaresJAL-4409 Add jalviewhttp and jalviewhttps schemes to... commit | commitdiff
2023-10-13 Ben SoaresJAL-3783 Updated groovy jars. Requires javaparser... commit | commitdiff
2023-10-13 Ben SoaresJAL-3783 Updated build process to allow multiple groovy... commit | commitdiff
2023-10-11 Ben SoaresJAL-629 Change getdown not to add -open argument commit | commitdiff
2023-09-07 MorellThomasMerge branch 'hardcode' commit | commitdiff
2023-09-07 MorellThomasImplemented least-squares optimisation in ccAnalysis commit | commitdiff
2023-08-29 Ben SoaresMerge branch 'bug/JAL-4255_slf4j_missing_StaticLoggerBi... commit | commitdiff
2023-08-29 Ben SoaresJAL-4255 Added slf4j-nop jar and upgraded to last 1... commit | commitdiff
2023-08-23 Ben SoaresMerge branch 'improvement/JAL-4250_secondary_structure_... commit | commitdiff
2023-08-23 Ben SoaresJAL-4250 Updated jfreesvg to fix round stroke in linegraph. commit | commitdiff
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-3830_remove_dock_icon_in_... commit | commitdiff
2023-08-18 Ben SoaresJAL-3416 flatlaf and flatlaf-extras 3.2 jars commit | commitdiff
2023-08-16 Ben SoaresJAL-3820 JAL-4189 Use the same LaunchUtils methods... commit | commitdiff
2023-06-16 Ben SoaresJAL-4001 Remove jgoogleanalytics code and jar commit | commitdiff
2023-05-25 Ben SoaresJAL-3820 JAL-3830 improvements to script launching... commit | commitdiff
2023-05-25 Ben SoaresJAL-3820 Create and use 'Jalview app' symblinks to... commit | commitdiff
2023-05-24 Ben SoaresJAL-3416 Updated flatlaf libraries. Native libraries... commit | commitdiff
2023-02-22 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... commit | commitdiff
2023-02-16 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... commit | commitdiff
2023-02-03 Ben SoaresJAL-629 "updated" json-simple commit | commitdiff
2023-01-16 Ben SoaresJAL-3416 More tweaking of FlatLaf. Problem with macOS... commit | commitdiff
2023-01-06 Ben SoaresJAL-3416 Upgraded FlatLaf to 3.0 and added macOS theme... commit | commitdiff
2022-06-13 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... commit | commitdiff
2022-06-13 Ben SoaresJAL-3416 updated FlatLAF libraries to 2.3. Added the... commit | commitdiff
2022-05-12 Ben SoaresMerge branch 'develop' into issues/JAL-3553+JAL-3978... issues/JAL-3553+JAL-3978+JAL-3989+JAL-4004_merged_with_develop commit | commitdiff
2022-05-10 Jim ProcterJAL-4008 update jabaws client to 2.2.1 - definitely... patch/JAL-4008_jabaws_2_2_1_patch commit | commitdiff
2022-03-21 Ben SoaresJAL-3416 Updated FlatLaF to 2.1 commit | commitdiff
2022-03-18 Ben SoaresJAL-3978 Using getdowninstanceappdir and getdowninstanc... commit | commitdiff
2022-03-18 Ben SoaresJAL-3978 Getdown add getdownappbase property to launche... commit | commitdiff
2022-03-09 Jalview Developmen... JAL-3796 commit jni lib in Jmol library that is signed... commit | commitdiff
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse... commit | commitdiff
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2 commit | commitdiff
2022-03-02 Ben SoaresJAL-3691 bumped the version to 1.8.3-1.2.12 in source... benreview/JAL-3691_for_2_11_2_getdownrebuilds commit | commitdiff
2022-02-17 Jim ProcterJAL-3691 rebuilt getdown jars commit | commitdiff
2022-02-11 Jim ProcterMerge branch 'update/JAL-3949_jalview_bin_Console_to_cu... commit | commitdiff
2022-02-10 Jim ProcterMerge branch 'bug/JAL-3523_cwd_not_preserved' into... commit | commitdiff
2022-02-04 Ben SoaresJAL-3949 An attempt at converting to Log4j 2 -- no... commit | commitdiff
2022-02-03 Ben SoaresJAL-3949 upgraded log4j to 2.17.1 (no actual known... commit | commitdiff
2022-01-28 Ben SoaresMerge branch 'develop' into JAL-3416_different_look_and... commit | commitdiff
2022-01-27 Ben Soaresupdate to flatlaf 2.0.1 commit | commitdiff
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal... commit | commitdiff
2021-12-22 Ben SoaresJAL-3934 updated log4j from 2.16.0 to 2.17.0 commit | commitdiff
2021-12-22 Ben SoaresJAL-3934 updated log4j from 2.16.0 to 2.17.0 commit | commitdiff
2021-12-14 Ben SoaresJAL-3933 updated log4j and slf4j jars with log4j1.2... commit | commitdiff
2021-12-14 Ben SoaresJAL-3933 updated slf4j to 1.7.32 commit | commitdiff
2021-12-14 Ben SoaresJAL-3933 Updated log4j jars with log4j-2.16.0 and compa... commit | commitdiff
2021-10-04 Ben SoaresJAL-3416 updated FlatLaf to 1.6 and added some tabbed... commit | commitdiff
2021-10-04 Ben SoaresMerge branch 'develop' into JAL-3416_different_look_and... commit | commitdiff
2021-09-28 Ben SoaresJAL-3783 Updated groovy-all-2.4. Currently newer stable... commit | commitdiff
2021-09-17 Jim ProcterJAL-3874 - replace Jmol with custom build of 14.31... patch/JAL-3874_newJmolAndGradleDedup commit | commitdiff
2021-09-15 Ben SoaresJAL-3829 Fixed Jmol jar -- duplicates of other classes... commit | commitdiff
2021-09-12 Jim ProcterJAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to... commit | commitdiff
2021-03-25 Ben SoaresJAL-3633 new getdown jars commit | commitdiff
2021-03-25 Ben SoaresJAL-3633 new getdown jars commit | commitdiff
2021-03-19 Ben SoaresJAL-3503 New getdown version and jar files commit | commitdiff
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