JAL-3201 restore group colours correctly from project
[jalview.git] / src / MCview / PDBChain.java
2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnn...
2018-02-11 Jim ProcterJAL-2781 mark aligned positions via StructureMapping...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const...
2017-05-09 gmungocJAL-2505 use constructors to set (what will be) final...
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter...
2016-11-11 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-09 gmungocJAL-2295 single constant for "RESNUM" feature name
2016-11-08 tcofoegbuJAL-2292 updated method calls
2016-11-04 tcofoegbuJAL-2292 squashed bug that breaks feature mapping for...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-10 tcofoegbuJAL-2262 JAL-2195 bug fix for mapping local structure...
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-08-05 gmungocJAL-2164 add transferred annotation to sequence
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing...
2016-07-01 tcofoegbuJAL-2135 bugfix for error preventing processing of...
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser...
2016-04-13 tcofoegbuJAL-1270 more fix for failing Functional test
2016-03-30 tcofoegbuJAL-1668 further clean-up of popup menu and NPE check...
2016-03-21 tcofoegbudevelop merge
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings...
2016-03-11 tcofoegbuJAL-1478 Fixed ArrayIndexOutOfBoundsException while...
2016-03-11 tcofoegbuJAL-1818 reimplemented sequence and annotation processi...
2016-02-26 tcofoegbuJAL-2009 reverted 'RES NUM' feature back to 'RESNUM'
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API....
2016-02-19 tcofoegbuJAL-2009 Codes to enable storing inserted residues...
2016-01-25 tcofoegbuJAL-1998 bugfix for division by zero error for PDB...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-06-04 gmungocJAL-1421 generic collections in MCView package (+unit...
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-27 Jim ProcterJAL-674 patch to fix bug with showing reference annotat...
2014-11-27 Jim ProcterJAL-674 formatting
2014-11-26 Jim ProcterJAL-674 disable addition of PDBRESNUM annotation line
2014-11-26 Jim ProcterJAL-674 nicer temperature factor labelling and include...
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct...
2014-11-12 Jim ProcterJAL-674 switch from .transfer to .liftOver for transfer...
2014-10-30 Jim ProcterJAL-674 hang on to sequences created by secondary parsi...
2014-10-21 Jim ProcterJAL-1551 formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-07-21 jprocterretrieve all sequences matching a particular name ...
2011-07-07 jprocterextract sequence from DNA bases like 'DG' (JAL-866)
2011-01-18 jprocterjavadoc
2011-01-18 jprocterjavadoc
2011-01-05 jprocterJAL-727
2010-11-11 jprocterimproved logic for distinguishing amino acids and nucle...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-08-18 jproctercutn'paste fix so rna residue chains are assembled...
2010-06-29 jproctertypo bugfix
2010-06-11 jprocterpatch for JAL-556
2010-04-30 jprocterjalview 2.5 release banner
2009-10-30 jprocterna pdb: recognise NA residue names
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2007-05-07 amwaterhouseUse PDB id for grouping mappings
2007-04-25 jproctertransfer of residue numbering as alignment annotation
2007-04-19 jproctertfactor annotation description includes full sequenceID
2007-04-19 jproctertfactor and occupancy extracted from PDB file, and...
2007-03-26 jprocterPDB residue numberings transfered and alignment view...
2007-02-27 amwaterhouseblank space for chain name if empty
2007-02-07 amwaterhouseformatting
2007-02-01 amwaterhousefind colours uncommented
2007-01-23 jproctertransfer resnum features now returns features (could...
2007-01-19 jprocterPDBChain maintains reference to dataset of sequences...
2007-01-18 jprocterfixed last-residue bug and added sequence feature creat...
2006-12-05 amwaterhousesequence is char []
2006-08-21 amwaterhouseheader updated
2005-12-09 amwaterhouseAll colours added to Structure viewer
2005-12-08 amwaterhouseEqualsignoreCase
2005-12-06 amwaterhousePDB structure viewer updated
2005-09-30 amwaterhouseRemove redundancy from Eclipse
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-25 jproctertidied up system.out messages and moved many to stderr.
2005-05-05 amwaterhousecolour by sequence just about works
2005-03-23 amwaterhousedrawableSequence removed
2004-11-18 amwaterhouseNew files