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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
MCview
/ PDBChain.java
2018-08-21
hansonr
JAL-3026 MCview -> mc_view
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commitdiff
2018-04-23
gmungoc
JAL-2952 set negative TempFactor values as AlignmentAnn...
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commitdiff
2018-02-11
Jim Procter
JAL-2781 mark aligned positions via StructureMapping...
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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commitdiff
2017-05-25
gmungoc
JAL-2557 removal of Sequence.sequenceFeatures
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commitdiff
2017-05-25
gmungoc
JAL-2050 make SequenceFeature.score final, adjust const...
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commitdiff
2017-05-09
gmungoc
JAL-2505 use constructors to set (what will be) final...
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commitdiff
2017-03-01
gmungoc
Merge branch 'features/JAL-2295setChimeraAttributes...
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commitdiff
2017-01-09
gmungoc
JAL-2371 remove ColourSchemeI.findColour(c), pure inter...
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commitdiff
2016-11-11
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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commitdiff
2016-11-09
gmungoc
JAL-2295 single constant for "RESNUM" feature name
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commitdiff
2016-11-08
tcofoegbu
JAL-2292 updated method calls
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commitdiff
2016-11-04
tcofoegbu
JAL-2292 squashed bug that breaks feature mapping for...
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
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commitdiff
2016-10-10
tcofoegbu
JAL-2262 JAL-2195 bug fix for mapping local structure...
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
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commitdiff
2016-08-05
gmungoc
JAL-2164 add transferred annotation to sequence
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commitdiff
2016-07-08
tcofoegbu
JAL-1919 Fixed failing tests, enabled HETATM processing...
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commitdiff
2016-07-01
tcofoegbu
JAL-2135 bugfix for error preventing processing of...
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commitdiff
2016-06-30
tcofoegbu
JAL-1919 updated PDBSequenceFetcherTest and JMol parser...
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commitdiff
2016-04-13
tcofoegbu
JAL-1270 more fix for failing Functional test
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commitdiff
2016-03-30
tcofoegbu
JAL-1668 further clean-up of popup menu and NPE check...
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commitdiff
2016-03-21
tcofoegbu
develop merge
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commitdiff
2016-03-15
tcofoegbu
JAL-1919 refined structure view annotation settings...
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commitdiff
2016-03-11
tcofoegbu
JAL-1478 Fixed ArrayIndexOutOfBoundsException while...
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commitdiff
2016-03-11
tcofoegbu
JAL-1818 reimplemented sequence and annotation processi...
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commitdiff
2016-02-26
tcofoegbu
JAL-2009 reverted 'RES NUM' feature back to 'RESNUM'
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commitdiff
2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
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commitdiff
2016-02-19
tcofoegbu
JAL-2009 Codes to enable storing inserted residues...
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commitdiff
2016-01-25
tcofoegbu
JAL-1998 bugfix for division by zero error for PDB...
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
2015-06-04
gmungoc
JAL-1421 generic collections in MCView package (+unit...
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
2014-11-27
Jim Procter
JAL-674 patch to fix bug with showing reference annotat...
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commitdiff
2014-11-27
Jim Procter
JAL-674 formatting
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commitdiff
2014-11-26
Jim Procter
JAL-674 disable addition of PDBRESNUM annotation line
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commitdiff
2014-11-26
Jim Procter
JAL-674 nicer temperature factor labelling and include...
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commitdiff
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
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commitdiff
2014-11-12
Jim Procter
JAL-674 switch from .transfer to .liftOver for transfer...
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commitdiff
2014-10-30
Jim Procter
JAL-674 hang on to sequences created by secondary parsi...
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commitdiff
2014-10-21
Jim Procter
JAL-1551 formatting
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
2012-10-03
jprocter
formatting
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
2011-07-21
jprocter
retrieve all sequences matching a particular name ...
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commitdiff
2011-07-07
jprocter
extract sequence from DNA bases like 'DG' (JAL-866)
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commitdiff
2011-01-18
jprocter
javadoc
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commitdiff
2011-01-18
jprocter
javadoc
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commitdiff
2011-01-05
jprocter
JAL-727
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commitdiff
2010-11-11
jprocter
improved logic for distinguishing amino acids and nucle...
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commitdiff
2010-09-23
jprocter
apply jalview code style
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
2010-08-18
jprocter
cutn'paste fix so rna residue chains are assembled...
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commitdiff
2010-06-29
jprocter
typo bugfix
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commitdiff
2010-06-11
jprocter
patch for JAL-556
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
2009-10-30
jprocter
na pdb: recognise NA residue names
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commitdiff
2009-06-08
jprocter
apply gpl development license
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
2007-05-07
amwaterhouse
Use PDB id for grouping mappings
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commitdiff
2007-04-25
jprocter
transfer of residue numbering as alignment annotation
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commitdiff
2007-04-19
jprocter
tfactor annotation description includes full sequenceID
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commitdiff
2007-04-19
jprocter
tfactor and occupancy extracted from PDB file, and...
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commitdiff
2007-03-26
jprocter
PDB residue numberings transfered and alignment view...
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commitdiff
2007-02-27
amwaterhouse
blank space for chain name if empty
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commitdiff
2007-02-07
amwaterhouse
formatting
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commitdiff
2007-02-01
amwaterhouse
find colours uncommented
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commitdiff
2007-01-23
jprocter
transfer resnum features now returns features (could...
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commitdiff
2007-01-19
jprocter
PDBChain maintains reference to dataset of sequences...
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commitdiff
2007-01-18
jprocter
fixed last-residue bug and added sequence feature creat...
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commitdiff
2006-12-05
amwaterhouse
sequence is char []
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commitdiff
2006-08-21
amwaterhouse
header updated
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commitdiff
2005-12-09
amwaterhouse
All colours added to Structure viewer
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commitdiff
2005-12-08
amwaterhouse
EqualsignoreCase
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commitdiff
2005-12-06
amwaterhouse
PDB structure viewer updated
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commitdiff
2005-09-30
amwaterhouse
Remove redundancy from Eclipse
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commitdiff
2005-06-08
amwaterhouse
Formatted source
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commitdiff
2005-06-08
amwaterhouse
GPL license added
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commitdiff
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
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commitdiff
2005-05-05
amwaterhouse
colour by sequence just about works
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commitdiff
2005-03-23
amwaterhouse
drawableSequence removed
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commitdiff
2004-11-18
amwaterhouse
New files
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