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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / MCview / PDBfile.java
2018-08-21 hansonrJAL-3026 MCview -> mc_view commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum commit | commitdiff
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati... commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing... commit | commitdiff
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings... commit | commitdiff
2016-03-03 tcofoegbuJAL-1919 PDBfile and JmolParser refactor commit | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... commit | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... commit | commitdiff
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc... commit | commitdiff
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... commit | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... commit | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports commit | commitdiff
2015-06-08 gmungocJAl-1421 fix method reflection argument (properly this... commit | commitdiff
2015-06-08 gmungocJAL-1421 undid premature 'improvement' of method parame... commit | commitdiff
2015-06-04 gmungocJAL-1421 generic collections in MCView package (+unit... commit | commitdiff
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB... commit | commitdiff
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the... commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-11-26 Jim ProcterJAL-674 employ the provided DNA/Protein matrix string... commit | commitdiff
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct... commit | commitdiff
2014-10-31 Jim ProcterJAL-674 JAL-961 pass row reference to handler to check... commit | commitdiff
2014-10-30 Jim ProcterJAL-674 hang on to sequences created by secondary parsi... commit | commitdiff
2014-10-30 Jim ProcterJAL-1551 format and tidy commit | commitdiff
2014-10-21 Jim ProcterJAL-674 check for null vector before ... commit | commitdiff
2014-10-21 Jim ProcterJAL-674 remove any spurious PDBEntrys generated by... commit | commitdiff
2014-10-21 Jim ProcterJAL-674 methods and test for PDB derived annotation... commit | commitdiff
2014-10-21 Jim ProcterJAL-674 store ID in MCview.PDBfile calcId string, not... commit | commitdiff
2014-10-21 Jim ProcterJAL-674 test for presence of annotation derived from... commit | commitdiff
2014-10-21 Jim ProcterJAL-1551 formatting commit | commitdiff
2014-10-21 Jim ProcterJAL-674 refactor method to match and transfer annotatio... commit | commitdiff
2014-10-15 Jim ProcterJAL-674 support preservation of any annotation created... commit | commitdiff
2014-10-15 Jim ProcterJAL-674 make transferAnnotation method static commit | commitdiff
2014-10-10 Jim ProcterJAL-674 typo commit | commitdiff
2014-10-10 Jim ProcterJAL-674 new constructors to pass flags about annotating... commit | commitdiff
2014-10-10 Jim ProcterJAL-674 parser flag to control secondary structure... commit | commitdiff
2014-10-06 Jim ProcterJAL-654_dssp formatting and javadoc commit | commitdiff
2014-09-26 darolmarJAL-1355 commit | commitdiff
2014-09-23 darolmarJAL-1355 commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch commit | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop commit | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices commit | commitdiff
2013-10-15 Jim Procterworkaround for JAL-1395 commit | commitdiff
2013-06-09 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 commit | commitdiff
2013-06-09 Jim ProcterJAL-674 avoid runtime dependency on annotate3d webservi... commit | commitdiff
2013-05-21 Jim ProcterJAL-1140 JAL-674 process with annotate3d and Jmol to... commit | commitdiff
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced... commit | commitdiff
2013-02-13 jprocterJAL-1214 todo commit | commitdiff
2013-02-13 jprocterJAL-674 commented out annotate3d calling code for Jmol... commit | commitdiff
2013-02-13 jprocterJAL-1028 JAL-674 hooks to call external processing... commit | commitdiff
2012-12-07 jprocterproxy commit for Anne Menard <menard.annec@gmail.com... commit | commitdiff
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep... commit | commitdiff
2012-12-04 jprocterJAL-1214 todo commit | commitdiff
2012-12-04 jprocterJAL-674 commented out annotate3d calling code for Jmol... commit | commitdiff
2012-12-04 jprocterJAL-1028 JAL-674 hooks to call external processing... commit | commitdiff
2012-12-04 jprocterJAL-1028 tidy and refactor external processing and... commit | commitdiff
2012-11-19 jprocterbugfix commit | commitdiff
2012-11-17 jprocterreturn annotated rna sequences from rnaml returned... commit | commitdiff
2012-11-17 jprocterstore chainid on pdbentry commit | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard commit | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header commit | commitdiff
2012-10-03 jprocterformatting commit | commitdiff
2012-08-14 Anne Menardlast version stay many bugs .. commit | commitdiff
2012-07-16 Anne MenardLast version commit | commitdiff
2012-07-10 Anne Menardv2 commit | commitdiff
2012-07-05 Anne MenardAdd support RNAML format commit | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) commit | commitdiff
2011-09-27 jprocterapply version 2.7 copyright commit | commitdiff
2011-01-06 jprocterJAL-730 commit | commitdiff
2010-09-23 jprocterJalview 2.6 source licence commit | commitdiff
2010-04-30 jprocterjalview 2.5 release banner commit | commitdiff
2009-10-30 jprocterna pdb: detect P backbone commit | commitdiff
2009-10-12 jprocterensure id string doesn't get set to the empty string... commit | commitdiff
2009-06-08 jprocterpatch for wierd format header lines and apply gpl devel... commit | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch commit | commitdiff
2008-01-29 jprocterFileParse object can be re-used to read different files... commit | commitdiff
2007-06-17 jprocterfix modeller generated PDB file reading bug (missing... commit | commitdiff
2007-04-20 jprocteradds annotation for display (with flag to set alignment... commit | commitdiff
2007-02-07 amwaterhouseformatting commit | commitdiff
2007-01-19 jprocterPDBChain maintains reference to dataset of sequences... commit | commitdiff
2007-01-18 jproctertransfer and update of sequenceFeatures for associated... commit | commitdiff
2006-11-20 amwaterhouseMemory check on PDB file commit | commitdiff
2006-08-21 amwaterhouseheader updated commit | commitdiff
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