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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
analysis
/ Finder.java
2024-08-05
Jim Procter
JAL-1551 gradle spotlessApply and doc tweaks
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commitdiff
2023-09-08
MorellThomas
Properly integrated endGaps option for AlignSeq.traceAl...
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commitdiff
2022-09-15
Jim Procter
JAL-4061 use alignment panel’s feature renderer to...
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commitdiff
2022-09-15
Jim Procter
JAL-4061 support incremental search of features
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commitdiff
2022-09-15
Jim Procter
JAL-4061 tests, bugfixes and TODOs for matching feature...
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commitdiff
2022-09-14
Jim Procter
JAL-4061 JAL-4062 Find can now search features
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
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commitdiff
2020-10-28
Jim Procter
fix for JAL-3765
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commitdiff
2020-10-20
Jim Procter
fix for JAL-3765
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commitdiff
2020-08-17
Jim Procter
JAL-3490 merged with 2.11.2 develop
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commitdiff
2020-08-10
gmungoc
JAL-3490 match count independent of contiguous matches...
patch/Release_2_11_1_Branch_patch_JAL-3490
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commitdiff
2019-12-12
gmungoc
JAL-3490 unit test for ignore hidden regions with selec...
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commitdiff
2019-12-11
gmungoc
JAL-3490 tests for skip hidden regions (and a bug fix)
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commitdiff
2019-12-11
gmungoc
JAL-3490 revised layout and search algorithm (more...
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commitdiff
2019-11-29
gmungoc
JAL-3490 Finder match across entirely gapped hidden...
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commitdiff
2018-03-14
gmungoc
JAL-2933 pass viewport in Finder constructor, find...
bug/JAL-2839findWithHidden
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commitdiff
2018-03-14
gmungoc
JAL-2933 gui and applet Finder hold a FinderI per viewport
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commitdiff
2018-03-14
gmungoc
JAL-2839 refactored out getNextVisibleSequenceRegion
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commitdiff
2018-03-13
gmungoc
JAL-2839 refactored analysis.Finder and tests
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commitdiff
2018-03-09
gmungoc
JAL-2839 Finder refactoring prior to fixing the defect
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
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commitdiff
2016-11-03
gmungoc
JAL-2310 don't double-count sequence matches; code...
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commitdiff
2016-11-02
Jim Procter
JAL-1738 JAL-345 fix for JAL-2302 only report Matches...
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commitdiff
2016-10-28
Jim Procter
JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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commitdiff
2015-02-02
Charles Ofoegbu
Merge branch 'bug/JAL-1644_Finder-logic-improvement...
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2015-02-02
Charles Ofoegbu
JAL-1644 added null check for sequence description...
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commitdiff
2015-02-02
Charles Ofoegbu
Merge commit
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commitdiff
2015-02-02
Charles Ofoegbu
JAL-1644 revised Finder's implementation to use a flag...
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commitdiff
2015-02-02
Charles Ofoegbu
Merge branch 'bug/JAL-1644_Finder-logic-improvement...
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commitdiff
2015-02-02
Charles Ofoegbu
JAL-1644 improvment of finder logic to include the...
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
2014-06-13
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-1483_featu...
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
2014-04-21
Jim Procter
JAL-1481 relevant todo re warning user for broken regex
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
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2012-10-03
jprocter
formatting
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
2011-02-27
jprocter
patch for JAL-780
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
2010-04-28
jprocter
find incrementally searches ID then subsequence matches.
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commitdiff
2009-06-08
jprocter
apply gpl development license
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2008-12-01
jprocter
match case switch should work for both sequence ID...
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2008-11-12
jprocter
avoid exception if search returns valid object but...
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2008-09-04
jprocter
merge from 2_4_Release branch
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2008-01-29
jprocter
reinstated proper case insensitive searching for both...
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2007-02-07
amwaterhouse
Formatting
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commitdiff
2007-01-25
amwaterhouse
1.1 enabled
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commitdiff
2007-01-23
amwaterhouse
Hidden representatives moved from sequence to viewport
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commitdiff
2007-01-23
jprocter
refactoring (added seqIndex/resIndex state for incremen...
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commitdiff
2007-01-23
jprocter
refactored search algorithm from gui classes
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