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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / controller / AlignViewController.java
2024-08-05 Jim ProcterJAL-1551 gradle spotlessApply and doc tweaks commit | commitdiff
2024-05-13 Jim ProcterMerge branch 'develop' into features/JAL-518_justify_se... commit | commitdiff
2022-09-16 Jim ProcterJAL-518 refactored groovy script into main codebase... commit | commitdiff
2022-09-15 Jim ProcterJAL-4062 avc operation and model method for copying... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2020-10-29 Jim Procter JAL-3759 exclude hidden columns when processing... commit | commitdiff
2020-07-06 gmungocJAL-3311 JAL-3141 JAL-3144 tidying obsolete message... commit | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff
2020-03-20 Jim ProcterJAL-3549 javadoc commit | commitdiff
2020-03-09 gmungocJAL-3549 JAL-3305 no Sort By Score / Density if no... commit | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge commit | commitdiff
2019-04-20 gmungocJAL-2791 tailored message if find fails on selection... commit | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2018-11-19 Jim ProcterJAL-3127 drop redundant hidden representative sequences... commit | commitdiff
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup to create & propag... commit | commitdiff
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File... commit | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest commit | commitdiff
2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview... commit | commitdiff
2017-11-02 gmungocJAL-2808 spike updated with latest commit | commitdiff
2017-11-02 gmungocJAL-2808 refactored getColor() checks feature visibility commit | commitdiff
2017-10-31 gmungocMerge branch 'bug/JAL-2791selectVisibleFeatures' into commit | commitdiff
2017-10-31 gmungocJAL-2791 select columns by _visible_ features commit | commitdiff
2017-10-30 gmungocJAL-2791 check feature visibility when selecting columns commit | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest commit | commitdiff
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop commit | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest commit | commitdiff
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-09-01 gmungocJAL-2488 remove finalize methods commit | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn commit | commitdiff
2017-05-31 gmungocJAL-2574 preparation for Sequence.findFeatures(col1... commit | commitdiff
2017-05-19 gmungocJAL-2490 only count sequences where feature overlap... commit | commitdiff
2017-05-15 gmungocJAL-2490 use findFeatures() for efficient feature overl... commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop commit | commitdiff
2016-11-21 gmungocJAL-2333 corrected select columns with 'contact' feature commit | commitdiff
2016-10-30 Jim ProcterJAL-1738 JAL-345 new controller method based on mark... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum commit | commitdiff
2016-08-24 gmungocJAL-1424 recode calls to MessageManager to allow code... commit | commitdiff
2016-08-23 gmungocJAL-2174 markColumns() refactored inside ColumnSelection commit | commitdiff
2016-08-19 gmungocJAL-2174 bug fixes + refactoring to allow + unit tests commit | commitdiff
2016-08-18 gmungocJAL-1445 status message '...not containing...' for... commit | commitdiff
2016-07-12 gmungocFileFormat enum wip changes commit | commitdiff
2016-05-03 gmungocJAL-2050 hide introns also when fetching Ensembl xrefs... commit | commitdiff
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed... commit | commitdiff
2016-02-04 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... commit | commitdiff
2016-02-04 gmungocJAL-599 bug fixed so array of visible types is populated commit | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge commit | commitdiff
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe... commit | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code... commit | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... commit | commitdiff
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor commit | commitdiff
2015-02-12 Jim ProcterJAL-1350 pass the columnselection rather then selected... commit | commitdiff
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column... commit | commitdiff
2015-01-20 Charles OfoegbuFurther abstractions and clean up commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc commit | commitdiff
2014-09-23 darolmarJAL-1355 commit | commitdiff
2014-08-08 j.procter@dundee... tidy imports commit | commitdiff
2014-08-08 j.procter@dundee... JAL-1483 sort by feature score/density made first class... commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-05-23 Jim ProcterJAL-1445 extend functionality to select or toggle selec... commit | commitdiff
2014-02-17 Jim ProcterJAL-1445 ported routine for selecting containing/non... commit | commitdiff
2014-02-17 Jim ProcterJAL-535 interface for GUI state update methods that... commit | commitdiff
2013-10-07 Jim ProcterJAL-1385 Alignment view controller logic implementation... commit | commitdiff