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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
gui
/ AlignViewport.java
2024-08-05
Jim Procter
JAL-1551 gradle spotlessApply and doc tweaks
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commitdiff
2024-05-15
Renia Correya
JAL-4386 Added preferences for secondary structure...
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2024-04-30
Renia Correya
JAL-4392 Merging consensus secondary structure
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commitdiff
2023-10-19
Ben Soares
JAL-4305 Isolate and unify the Jalview object from...
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commitdiff
2023-07-19
Ben Soares
JAL-244 Changes to Annotation labels width now adjusts...
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commitdiff
2023-05-26
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
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commitdiff
2023-05-25
James Procter
JAL-4134 popup menu and annotation row property to...
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commitdiff
2023-05-25
Ben Soares
JAL-4186 Turn JvOptionPane Callable<Void> handlers...
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
2023-03-15
Ben Soares
JAL-629 Commands more objecty, less classy. FileLoader...
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commitdiff
2023-02-22
James Procter
JAL-4133 store/restore alignment view’s charWidth and...
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commitdiff
2023-02-22
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
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commitdiff
2023-02-16
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
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commitdiff
2023-02-03
James Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
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commitdiff
2022-11-23
Ben Soares
JAL-629 Doing things with the command line arguments
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commitdiff
2022-10-24
Ben Soares
JAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...
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commitdiff
2022-06-10
Jim Procter
JAL-2349 JAL-4027 JAL-3855 quick hack to add contact...
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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commitdiff
2021-09-02
gmungoc
JAL-3509 better placement of call to notifyFeaturesChan...
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commitdiff
2021-09-02
gmungoc
JAL-3509 coerce RESNUM to hidden (really) after fetchin...
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2020-08-27
Ben Soares
Merge branch 'releases/Release_2_11_1_Branch' into...
merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch
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commitdiff
2020-08-17
Jim Procter
JAL-3490 merged with 2.11.2 develop
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commitdiff
2020-07-31
Ben Soares
Merge branch 'releases/Release_2_11_1_Branch' into...
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commitdiff
2020-06-29
Jim Procter
Merge branch 'bug/JAL-3490findSpanHiddenGaps' into...
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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commitdiff
2020-02-27
Jim Procter
Merge branch 'bug/JAL-3412idWidthDiscrepancy' into...
bug/JAL-3412idWidthDiscrepancy
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2020-02-21
Jim Procter
Merge branch 'develop' into features/JAL-3187_uitweaks
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2020-02-19
Jim Procter
JAL-3538 anti-aliasing enabled by default
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2020-02-17
Jim Procter
JAL-3187 JAL-3533 JAL-3535 set feature settings dialog...
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commitdiff
2020-02-06
gmungoc
JAL-3509 better placement of call to notifyFeaturesChan...
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commitdiff
2020-02-06
gmungoc
JAL-3509 coerce RESNUM to hidden (really) after fetchin...
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commitdiff
2019-12-09
gmungoc
JAL-3490 pull up getViewAsVisibleContigs to base class...
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commitdiff
2019-08-19
gmungoc
JAL-3412 calculateIdWidth - more consistency, constants...
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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commitdiff
2019-06-24
Jim Procter
JAL-3330 mergeFeatureStyles - needs test coverage
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commitdiff
2019-04-18
hansonr
Corrects incorrect calls to ViewportRanges.setEndSeq()
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2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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2019-03-11
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
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commitdiff
2019-03-07
gmungoc
JAL-2250 default Apply Colour to All Groups selected
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commitdiff
2019-03-01
gmungoc
Merge branch 'feature/JAL-3093wrappedModeTooltips'...
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commitdiff
2018-12-18
gmungoc
JAL-3048 DialogRunnerI reduced to minimal implementation
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2018-12-10
gmungoc
JAL-3048 wip externalise trigger from RunResponse
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commitdiff
2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
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2018-12-06
gmungoc
JAL-3048 response() renamed addResponse(); checkstyle...
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2018-12-06
gmungoc
JAL-3048 explicit instead of default 'No' response...
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commitdiff
2018-10-17
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...
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2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
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commitdiff
2018-10-04
gmungoc
JAL-3132 set status message when over sequence id or...
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commitdiff
2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
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commitdiff
2018-08-27
hansonr
JAL-3026 alignmentFrame.statusBar.setText -> .setStatus
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2018-07-03
Jim Procter
JAL-3048 openLinkedAlignment refactor to use dialogRunn...
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commitdiff
2017-11-21
kiramt
JAL-2759 Remove getVisibleBlocksIterator call
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2017-11-21
kiramt
Merge branch 'develop' into feature/JAL-2759
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2017-11-15
gmungoc
JAL-2835 spike updated with latest
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2017-11-08
kiramt
Merge branch 'develop' into feature/JAL-2759
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commitdiff
2017-11-08
Jim Procter
Merge branch 'develop' into bug/JAL-2225mapMultipleChains
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commitdiff
2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
2017-09-29
kiramt
JAL-2674 finish with iterators for now
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commitdiff
2017-09-28
kiramt
JAL-2647 more iterators
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2017-09-14
gmungoc
JAL-2727 null more fields in AlignmentViewport.dispose...
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commitdiff
2017-09-05
gmungoc
JAL-2225 unused collateForPdb removed
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
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commitdiff
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
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commitdiff
2017-06-30
gmungoc
JAL-2602 pulled up identical methods to base class
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commitdiff
2017-06-27
gmungoc
JAL-2602 check for null or empty description when copyi...
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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commitdiff
2017-05-15
kiramt
Merge remote-tracking branch 'origin/develop' into...
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commitdiff
2017-05-12
Jim Procter
Merge branch 'features/JAL-2435splitScreenFont' into...
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commitdiff
2017-05-12
kiramt
JAL-2491 Renamed comp scrolling flag for consistency...
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commitdiff
2017-05-05
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
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2017-05-05
kiramt
Merge remote-tracking branch
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
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commitdiff
2017-05-05
kiramt
JAL-2491 More working split panel + new scrolling
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2017-04-28
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
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commitdiff
2017-04-27
Jim Procter
JAL-1933 use constant for preference token
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commitdiff
2017-04-27
Jim Procter
JAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
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2017-04-24
kiramt
Merge remote-tracking branch
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
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2017-03-30
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
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commitdiff
2017-03-23
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
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2017-03-21
kiramt
JAL-2388 Made ViewportRanges final
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2017-03-16
kiramt
JAL-2388 Applied ViewportRanges to code
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commitdiff
2017-03-16
kiramt
JAL-2388 Renamed viewport position props to viewport...
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commitdiff
2017-03-08
gmungoc
JAL-2435 copy font changes across split screen
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2017-03-07
kiramt
JAL-2388 Missed commit
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2017-03-06
kiramt
JAL-2388 Dependency tidy
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2017-03-06
gmungoc
JAL-2428 separate TreeModel from TreeBuilder/NJTree...
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2017-03-03
kiramt
JAL-2388 Initial removal of hidden cols/seqs out of...
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2017-03-01
kiramt
JAL-2388 Reverted to previous
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2017-03-01
kiramt
JAL-2388 Preliminary refactor check-in, does not compile
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2017-02-28
kiramt
JAL-2388 First move of endRes etc out of AlignmentViewp...
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2017-02-27
kiramt
JAL-2388 Make startRes,startSeq,endRes,endSeq private...
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2017-02-21
kiramt
Merge branch 'develop' into features/JAL-2388OverviewWindow
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2017-02-14
kiramt
JAL-2388 Removed unnecessary CommandListener interface...
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2017-02-10
gmungoc
JAL-2371 small move of code, typo correction
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commitdiff
2017-02-09
gmungoc
JAL-2371 ensure some colour scheme (may be None) is...
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