source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	gmungoc <g.m.carstairs@dundee.ac.uk>
	Mon, 24 Jul 2017 12:43:38 +0000 (14:43 +0200)
committer	gmungoc <g.m.carstairs@dundee.ac.uk>
	Mon, 24 Jul 2017 12:43:38 +0000 (14:43 +0200)
commit	163ed5b997bbda48e4cdd950e87a8fe01baae7fb
tree	77eb706d1123d2863b1ce84a431461d3b44441bd	tree \| snapshot
parent	c430867beda6dcf8236f59d1346ff4b026b0b62b	commit \| diff

spike branch updated from latest features/JAL-2446

87 files changed:

help/html/features/AnnotationColumnSelectionWithSM.png	[new file with mode: 0644]	blob
help/html/features/columnFilterByAnnotation.html		diff \| blob \| history
help/html/releases.html		diff \| blob \| history
resources/lang/Messages.properties		diff \| blob \| history
resources/lang/Messages_es.properties		diff \| blob \| history
src/jalview/api/FeatureColourI.java		diff \| blob \| history
src/jalview/appletgui/APopupMenu.java		diff \| blob \| history
src/jalview/appletgui/AlignFrame.java		diff \| blob \| history
src/jalview/appletgui/AlignViewport.java		diff \| blob \| history
src/jalview/appletgui/AlignmentPanel.java		diff \| blob \| history
src/jalview/appletgui/AnnotationColumnChooser.java		diff \| blob \| history
src/jalview/appletgui/AnnotationLabels.java		diff \| blob \| history
src/jalview/appletgui/AnnotationPanel.java		diff \| blob \| history
src/jalview/appletgui/FeatureColourChooser.java		diff \| blob \| history
src/jalview/appletgui/FeatureRenderer.java		diff \| blob \| history
src/jalview/appletgui/FeatureSettings.java		diff \| blob \| history
src/jalview/appletgui/IdCanvas.java		diff \| blob \| history
src/jalview/appletgui/OverviewCanvas.java		diff \| blob \| history
src/jalview/appletgui/OverviewPanel.java		diff \| blob \| history
src/jalview/appletgui/ScalePanel.java		diff \| blob \| history
src/jalview/appletgui/SeqCanvas.java		diff \| blob \| history
src/jalview/appletgui/SeqPanel.java		diff \| blob \| history
src/jalview/appletgui/SliderPanel.java		diff \| blob \| history
src/jalview/datamodel/Alignment.java		diff \| blob \| history
src/jalview/datamodel/AlignmentI.java		diff \| blob \| history
src/jalview/datamodel/BinarySequence.java		diff \| blob \| history
src/jalview/datamodel/CigarArray.java		diff \| blob \| history
src/jalview/datamodel/ColumnSelection.java		diff \| blob \| history
src/jalview/datamodel/HiddenColumns.java		diff \| blob \| history
src/jalview/datamodel/HiddenSequences.java		diff \| blob \| history
src/jalview/datamodel/SequenceFeature.java		diff \| blob \| history
src/jalview/datamodel/SequenceGroup.java		diff \| blob \| history
src/jalview/datamodel/VisibleColsIterator.java		diff \| blob \| history
src/jalview/gui/AlignFrame.java		diff \| blob \| history
src/jalview/gui/AlignViewport.java		diff \| blob \| history
src/jalview/gui/AlignmentPanel.java		diff \| blob \| history
src/jalview/gui/AnnotationColumnChooser.java		diff \| blob \| history
src/jalview/gui/AnnotationLabels.java		diff \| blob \| history
src/jalview/gui/AnnotationPanel.java		diff \| blob \| history
src/jalview/gui/FeatureColourChooser.java		diff \| blob \| history
src/jalview/gui/FeatureRenderer.java		diff \| blob \| history
src/jalview/gui/IdCanvas.java		diff \| blob \| history
src/jalview/gui/IdPanel.java		diff \| blob \| history
src/jalview/gui/Jalview2XML.java		diff \| blob \| history
src/jalview/gui/OverviewCanvas.java		diff \| blob \| history
src/jalview/gui/OverviewPanel.java		diff \| blob \| history
src/jalview/gui/PopupMenu.java		diff \| blob \| history
src/jalview/gui/ScalePanel.java		diff \| blob \| history
src/jalview/gui/SeqCanvas.java		diff \| blob \| history
src/jalview/gui/SeqPanel.java		diff \| blob \| history
src/jalview/gui/SliderPanel.java		diff \| blob \| history
src/jalview/io/AnnotationFile.java		diff \| blob \| history
src/jalview/io/JSONFile.java		diff \| blob \| history
src/jalview/renderer/OverviewRenderer.java		diff \| blob \| history
src/jalview/renderer/ResidueShader.java		diff \| blob \| history
src/jalview/renderer/seqfeatures/FeatureRenderer.java		diff \| blob \| history
src/jalview/schemes/FeatureColour.java		diff \| blob \| history
src/jalview/schemes/ResidueColourScheme.java		diff \| blob \| history
src/jalview/schemes/ScoreColourScheme.java		diff \| blob \| history
src/jalview/util/MappingUtils.java		diff \| blob \| history
src/jalview/viewmodel/AlignmentViewport.java		diff \| blob \| history
src/jalview/viewmodel/OverviewDimensions.java		diff \| blob \| history
src/jalview/viewmodel/OverviewDimensionsHideHidden.java		diff \| blob \| history
src/jalview/viewmodel/OverviewDimensionsShowHidden.java		diff \| blob \| history
src/jalview/viewmodel/ViewportRanges.java		diff \| blob \| history
src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java		diff \| blob \| history
test/jalview/datamodel/AlignmentTest.java		diff \| blob \| history
test/jalview/datamodel/ColumnSelectionTest.java		diff \| blob \| history
test/jalview/datamodel/HiddenColumnsTest.java		diff \| blob \| history
test/jalview/datamodel/HiddenSequencesTest.java		diff \| blob \| history
test/jalview/datamodel/SequenceFeatureTest.java		diff \| blob \| history
test/jalview/datamodel/SequenceGroupTest.java		diff \| blob \| history
test/jalview/gui/AlignFrameTest.java		diff \| blob \| history
test/jalview/gui/AlignViewportTest.java		diff \| blob \| history
test/jalview/io/JSONFileTest.java		diff \| blob \| history
test/jalview/renderer/seqfeatures/FeatureColourFinderTest.java		diff \| blob \| history
test/jalview/renderer/seqfeatures/FeatureRendererTest.java		diff \| blob \| history
test/jalview/schemes/BuriedColourSchemeTest.java	[new file with mode: 0644]	blob
test/jalview/schemes/FeatureColourTest.java		diff \| blob \| history
test/jalview/schemes/HelixColourSchemeTest.java	[new file with mode: 0644]	blob
test/jalview/schemes/HydrophobicColourSchemeTest.java	[new file with mode: 0644]	blob
test/jalview/schemes/StrandColourSchemeTest.java	[new file with mode: 0644]	blob
test/jalview/schemes/TurnColourSchemeTest.java	[new file with mode: 0644]	blob
test/jalview/schemes/UserColourSchemeTest.java		diff \| blob \| history
test/jalview/util/MappingUtilsTest.java		diff \| blob \| history
test/jalview/viewmodel/ViewportRangesTest.java		diff \| blob \| history
utils/InstallAnywhere/Jalview.iap_xml		diff \| blob \| history

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