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spike branch updated from latest features/JAL-2446
[jalview.git] / src / jalview / viewmodel / AlignmentViewport.java
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 blob | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup blob | commitdiff | diff to current
2017-05-15 Jim ProcterJAL-2371 create a default ResidueShader when constructi... blob | commitdiff | diff to current
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into... blob | commitdiff | diff to current
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... blob | commitdiff | diff to current
2017-05-05 kiramtMerge remote-tracking branch blob | commitdiff | diff to current
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into blob | commitdiff | diff to current
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent blob | commitdiff | diff to current
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa... blob | commitdiff | diff to current
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment... blob | commitdiff | diff to current
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts blob | commitdiff | diff to current
2017-04-24 kiramtMerge remote-tracking branch blob | commitdiff | diff to current
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected... blob | commitdiff | diff to current
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... blob | commitdiff | diff to current
2017-04-19 kiramtMerge remote-tracking branch 'origin/develop' into blob | commitdiff | diff to current
2017-04-03 gmungocMerge branch 'develop' into features/JAL-2435splitScree... blob | commitdiff | diff to current
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView blob | commitdiff | diff to current
2017-03-31 gmungocJAL-2435 slightly more sensible behaviour changing... blob | commitdiff | diff to current
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into blob | commitdiff | diff to current
2017-03-21 kiramtJAL-2388 Made ViewportRanges final blob | commitdiff | diff to current
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... blob | commitdiff | diff to current
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code blob | commitdiff | diff to current
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport... blob | commitdiff | diff to current
2017-03-15 gmungocJAL-2431 show cDNA consensus after New View in split... blob | commitdiff | diff to current
2017-03-15 kiramtJAL-2388 Unit tests and tidies blob | commitdiff | diff to current
2017-03-01 kiramtJAL-2388 Reverted to previous blob | commitdiff | diff to current
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... blob | commitdiff | diff to current
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile blob | commitdiff | diff to current
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp... blob | commitdiff | diff to current
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... blob | commitdiff | diff to current
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow blob | commitdiff | diff to current
2017-02-10 gmungocJAL-2371 small move of code, typo correction blob | commitdiff | diff to current
2017-02-09 kiramtMerge remote-tracking branch 'origin/develop' into... blob | commitdiff | diff to current
2017-02-09 kiramtJAL-2388 Initial refactor of OverviewPanel blob | commitdiff | diff to current
2017-02-09 gmungocJAL-2405 set initial selection group alignment context blob | commitdiff | diff to current
2017-02-08 gmungocJAL-2405 set context on selection group for tailored... blob | commitdiff | diff to current
2017-01-31 gmungocJAL-2371 commented code removed only blob | commitdiff | diff to current
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... blob | commitdiff | diff to current
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... blob | commitdiff | diff to current
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... blob | commitdiff | diff to current
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1 blob | commitdiff | diff to current
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact... blob | commitdiff | diff to current
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour... blob | commitdiff | diff to current
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI blob | commitdiff | diff to current
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... blob | commitdiff | diff to current
2016-12-04 Jim ProcterJAL-1933 switch from gap count to occupancy blob | commitdiff | diff to current
2016-12-02 gmungocJAL-1933 gap value as description; minor formatting blob | commitdiff | diff to current
2016-12-01 Jim ProcterJAL-1933 basic hack to get gap counts shown as an annot... blob | commitdiff | diff to current
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... blob | commitdiff | diff to current
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns blob | commitdiff | diff to current
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... blob | commitdiff | diff to current
2016-11-02 gmungocJAL-98 ProfileI interface for Profile blob | commitdiff | diff to current
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... blob | commitdiff | diff to current
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp... blob | commitdiff | diff to current
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults... blob | commitdiff | diff to current
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop blob | commitdiff | diff to current
2016-10-26 gmungocJAL-98 null reference to globalColourScheme as it has... blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' blob | commitdiff | diff to current
2016-10-24 gmungocJAL-2283 set 'by conservation' correctly when changing... blob | commitdiff | diff to current
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-10-05 Jim ProcterJAL-2189 source formatting blob | commitdiff | diff to current
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... blob | commitdiff | diff to current
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... blob | commitdiff | diff to current
2016-09-22 gmungocJAL-2216 new dispose() method to null references blob | commitdiff | diff to current
2016-09-20 gmungocJAL-1306 calculate Quality also when Conservation not... blob | commitdiff | diff to current
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection... blob | commitdiff | diff to current
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157 blob | commitdiff | diff to current
2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSe... blob | commitdiff | diff to current
2016-09-01 Jim ProcterJAL-2034 check context of selection group to catch... blob | commitdiff | diff to current
2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method... blob | commitdiff | diff to current
2016-07-20 gmungocJAL-2023 stronger check for whether to start cdna consensus blob | commitdiff | diff to current
2016-07-14 Jim Procterfix for JAL-2147 blob | commitdiff | diff to current
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport blob | commitdiff | diff to current
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array blob | commitdiff | diff to current
2016-06-02 tcofoegbuJAL-1944 java doc update and minor house keeping blob | commitdiff | diff to current
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation blob | commitdiff | diff to current
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced... blob | commitdiff | diff to current
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection... blob | commitdiff | diff to current
2016-04-27 Jim ProcterJAL-2085 JAL-2086 fix hiddenRepSequence and new referen... blob | commitdiff | diff to current
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during... blob | commitdiff | diff to current
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset blob | commitdiff | diff to current
2016-03-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... blob | commitdiff | diff to current
2016-02-26 tcofoegbuJAL-1994 updated implementation for broken tests blob | commitdiff | diff to current
2016-02-26 tcofoegbuJAL-1994 fix for broken tests blob | commitdiff | diff to current
2016-02-25 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... blob | commitdiff | diff to current
2016-02-22 tcofoegbuJAL-1944 bugfix for error when exporting hidden sequenc... blob | commitdiff | diff to current
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin... blob | commitdiff | diff to current
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge blob | commitdiff | diff to current
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe... blob | commitdiff | diff to current
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding... blob | commitdiff | diff to current
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 blob | commitdiff | diff to current
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-09-03 Jim ProcterJAL-961 TODO use workers for calculations supporting... blob | commitdiff | diff to current
2015-09-03 Jim ProcterJAL-1551 source tidy blob | commitdiff | diff to current
2015-08-17 gmungocJAL-1691 scan full width and depth of alignment for... blob | commitdiff | diff to current
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