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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / gui / Jalview2XML.java
2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from... commit | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... commit | commitdiff
2019-01-21 gmungocJAL-3187 (hacked up) show complement features on struct... commit | commitdiff
2019-01-14 Ben SoaresJAL-3141 Forgot this file, sorry! commit | commitdiff
2019-01-14 Ben SoaresJAL-3141 Added a 'Save Project as...' File menu item... commit | commitdiff
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063 commit | commitdiff
2018-12-20 Jim ProcterJAL-3171 JAL-3063 merge updates from JAL-1767 commit | commitdiff
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug... commit | commitdiff
2018-12-14 Jim ProcterJAL-3171 resolve dataset for imported projects via... commit | commitdiff
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view commit | commitdiff
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... commit | commitdiff
2018-12-03 gmungocJAL-3063 Castor removed from codebase commit | commitdiff
2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment... commit | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... commit | commitdiff
2018-10-09 Jim ProcterJAL-3127 TODO - resolve reference to Viewport for group... commit | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... commit | commitdiff
2018-09-21 gmungocJAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour commit | commitdiff
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... commit | commitdiff
2018-07-10 gmungocJAL-3048 code reordered for JalviewJS compliance commit | commitdiff
2018-05-07 gmungocJAL-1767 scheme DoubleMatrix type includes D and E... commit | commitdiff
2018-05-07 gmungocJAL-1767 JAL-2647 hide 'Input Data..' for PCA loaded... commit | commitdiff
2018-05-07 gmungocJAL-1767 save PCA D and E vectors instead of 'details... commit | commitdiff
2018-05-04 gmungocJAL-1767 schema and Castor changes for Save PCA in... commit | commitdiff
2018-04-27 gmungocJAL-2964 tree@linkToAllViews attribute added to project... commit | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... commit | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest commit | commitdiff
2017-12-14 gmungocJAL-2843 save/restore colour feature by attribute,... commit | commitdiff
2017-12-14 gmungocJAL-2879 save/restore feature sub-attributes in Jalview... commit | commitdiff
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759 commit | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest commit | commitdiff
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop commit | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into... commit | commitdiff
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-09-28 gmungocJAL-2036 set menus after fully loading AlignFrame commit | commitdiff
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies commit | commitdiff
2017-09-14 gmungocJAL-2727 null more fields in AlignmentViewport.dispose... commit | commitdiff
2017-09-01 gmungocJAL-2488 remove finalize methods commit | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-08-10 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-08-10 gmungocJAL-2660 used saved value of ignoreGapsInConsensus... commit | commitdiff
2017-08-08 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-08-08 gmungocJAL-2650 configure new viewport settings before selecti... commit | commitdiff
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 commit | commitdiff
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... commit | commitdiff
2017-06-07 kiramtJAL-2591 More refactoring (incomplete) commit | commitdiff
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage commit | commitdiff
2017-06-06 kiramtJAL-2591 Removed getHiddenRegions()==null checks which... commit | commitdiff
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures commit | commitdiff
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... commit | commitdiff
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff
2017-05-05 kiramtMerge remote-tracking branch commit | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges commit | commitdiff
2017-05-02 kiramtJAL-2491 first addition of new event commit | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop commit | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... commit | commitdiff
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice commit | commitdiff
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code commit | commitdiff
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree... commit | commitdiff
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... commit | commitdiff
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect... commit | commitdiff
2017-02-14 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice commit | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... commit | commitdiff
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... commit | commitdiff
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff
2017-01-20 gmungocJAL-2383 restore group conservation slider setting... commit | commitdiff
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project... commit | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI commit | commitdiff
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... commit | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, commit | commitdiff
2016-12-01 gmungocJAL-2346 save annotation id instead of label with annot... commit | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane commit | commitdiff
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' commit | commitdiff
2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties commit | commitdiff
2016-10-11 gmungocJAL-2241 check for null jprovider when processing New... commit | commitdiff
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 Jim ProcterJAL-2036 rebuild menus for each panel before adding... commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties commit | commitdiff
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... commit | commitdiff
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty... commit | commitdiff
2016-09-13 tcofoegbuJAL-2195 bug fix to enable restoring jmol session save... commit | commitdiff
2016-09-04 Jim ProcterJAL-1919 preserve filename on restore of project so... commit | commitdiff
2016-09-04 Jim ProcterJAL-1803 recover type field faithfully for mmCIF/PDB... commit | commitdiff
2016-09-04 Jim ProcterJAL-1803 restore property array for a sequence’s associ... commit | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum commit | commitdiff
2016-08-19 Jim ProcterJAL-2154 - possible patch .. but leads to new stringify... commit | commitdiff
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