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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
io
/ FileParse.java
2024-05-29
Ben Soares
JAL-4414 Add SocketTimeoutException to exceptions that...
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commitdiff
2024-05-21
Ben Soares
JAL-1054 Change the rest of the url.openConnection...
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commitdiff
2024-05-14
Ben Soares
JAL-1054 Also recognise UnknownHostException as a file...
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commitdiff
2024-05-14
Ben Soares
JAL-4414 Add a FileNotFoundException when identifying...
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commitdiff
2024-05-13
Ben Soares
JAL-1054 Add wrappers for URL.openConnection(), URL...
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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commitdiff
2023-05-22
James Procter
JAL-1551 spotless
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
2022-10-06
Jim Procter
Patch for JAL-4074 - any content ending in ‘gzip’ recog...
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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commitdiff
2022-01-11
Ben Soares
JAL-3703 fix Gff3 shared InputStream with embedded...
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commitdiff
2020-08-21
Jim Procter
JAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615...
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commitdiff
2020-08-21
Jim Procter
JAL-3615 code tidy, improve unit test
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commitdiff
2020-08-20
Ben Soares
JAL-2656 better read of (potential) gzip magic bytes
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commitdiff
2020-08-18
gmungoc
JAL-2656 Java 8 compatible test for gzipped, refactored...
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commitdiff
2020-07-28
Jim Procter
JAL-3615 JAL-2656 missing import after cherrypick
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commitdiff
2020-07-28
Jim Procter
JAL-2656 recognise non-HTTP URI input streams as gzippe...
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commitdiff
2020-07-28
Jim Procter
JAL-2656 recognise Gzipped file input streams by their...
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commitdiff
2020-07-28
Jim Procter
JAL-2656 recognise non-HTTP URI input streams as gzippe...
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commitdiff
2020-07-28
Jim Procter
JAL-2656 recognise Gzipped file input streams by their...
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commitdiff
2020-07-27
gmungoc
JAL-2656 JAL-3615 check response headers to test for...
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commitdiff
2020-07-27
gmungoc
JAL-3615 used gzip endpoints for Pfam and Rfam
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commitdiff
2020-07-02
gmungoc
JAL-2656 JAL-3615 check response headers to test for...
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commitdiff
2020-07-02
gmungoc
JAL-3615 used gzip endpoints for Pfam and Rfam
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commitdiff
2020-04-21
gmungoc
JAL-3603 load annotation file from RELATIVE_URL in...
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commitdiff
2019-03-27
hansonr
consolidation of Platform isJS calls
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commitdiff
2018-07-20
gmungoc
JAL-3048 revised AlignExportSettings dialog with respon...
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commitdiff
2018-06-28
hansonr
FileAsBytes
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commitdiff
2018-06-28
hansonr
JAL-3032 FileChooser missing correct call to JSToolkit...
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2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
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2018-06-27
hansonr
JAL-3026 FileParser for JFileChooser results as ByteArr...
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commitdiff
2018-06-27
hansonr
JAL-3032 part2 local file reading by JFileChooser
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commitdiff
2018-06-23
hansonr
JAL-3026 JDesktop/JInternalFrames support + relative...
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commitdiff
2018-06-22
hansonr
fix for no access-control-origin on jalview site
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commitdiff
2018-05-24
gmungoc
JAL-2997 additional tests
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
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commitdiff
2016-03-23
tcofoegbu
JAL-2009 added programmatic custom feature setting...
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commitdiff
2016-01-05
gmungoc
Merge remote-tracking branch 'origin/features/JAL-1705_...
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commitdiff
2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
2015-10-15
Jim Procter
Merge branch 'develop' into features/JAL-1705_ensembl
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
2015-09-02
gmungoc
JAL-1544 spelling
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commitdiff
2015-06-26
Jim Procter
JAL-1705 - allow a FileParse to be constructed directly...
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commitdiff
2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
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commitdiff
2015-06-18
Jim Procter
JAL-653 JAL-1780 JAL-1543 javadoc and comment about...
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commitdiff
2015-06-18
Jim Procter
JAL-1780 JAL-653 moved AlignExportSettings reference...
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commitdiff
2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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commitdiff
2015-01-23
Jim Procter
JAL-1551 formatting
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commitdiff
2015-01-23
Jim Procter
JAL-1286 don't print an exception if a non-gzip stream...
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
2014-10-06
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-429_phylip...
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commitdiff
2014-10-03
Charles Ofoegbu
Integration of David Corsars Phylip File support
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commitdiff
2014-09-23
darolmar
JAL-1355
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
2013-11-07
Jim Procter
JAL-1286 check if local file ends with .gz and opens...
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commitdiff
2013-05-13
Jim Procter
JAL-1286 URL stream reader tries to use a GZIPInputStre...
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commitdiff
2013-04-12
Jim Procter
JAL-1286 URL stream reader tries to use a GZIPInputStre...
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
2012-10-03
jprocter
formatting
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
2011-01-05
jprocter
JAL-727
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commitdiff
2010-12-09
jprocter
dataIn.ready() is not a test of data source validity!
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commitdiff
2010-11-14
jprocter
refactored to decouple dependencies due to FileParse...
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commitdiff
2010-11-14
jprocter
refactored protocol parser and allow human readable...
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
2009-06-08
jprocter
apply gpl development license
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
2008-04-10
jprocter
bug fix for Features/Annotations file parameter parsing...
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commitdiff
2008-01-29
jprocter
FileParse object can be re-used to read different files...
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commitdiff
2007-10-31
jprocter
error message associated with an alignment file loading...
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commitdiff
2007-10-11
jprocter
pass up the errormessage in the exception when a dataso...
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commitdiff
2007-08-22
jprocter
added facility for sending non-fatal warnings back...
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commitdiff
2007-04-26
jprocter
fixed bug in prefix extraction for application
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2007-04-17
jprocter
bugfix.
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commitdiff
2007-04-17
jprocter
refactored to allow seeks on a FileParse datasource...
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2007-02-07
amwaterhouse
Formatting
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commitdiff
2006-08-21
amwaterhouse
header updated
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commitdiff
2006-03-08
amwaterhouse
Able to read resources from Zip file
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commitdiff
2005-06-30
amwaterhouse
Formatting changes
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commitdiff
2005-06-08
amwaterhouse
Formatted source
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commitdiff
2005-06-08
amwaterhouse
GPL license added
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commitdiff
2004-11-02
amwaterhouse
Jalview Imported Sources
start
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commitdiff