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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
io
/
vamsas
/ Tree.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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commitdiff
2023-05-22
James Procter
JAL-1551 spotless
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
2023-05-18
James Procter
JAL-4134 properly specify BinaryNode as a typed generic...
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commitdiff
2023-02-23
James Procter
JAL-4134 - brutal hack to build a tree clustering colum...
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commitdiff
2023-02-23
James Procter
JAL-4134 - refactor tree calculation code to work with...
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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commitdiff
2018-06-22
gmungoc
JAL-3032 avoid assignments on the same line as synchronized
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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commitdiff
2017-03-24
gmungoc
JAL-2428 simplify TreeModel constructors, add getOrigin...
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commitdiff
2017-03-24
gmungoc
JAL-1632 TreeChooser renamed CalculationChooser, text...
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commitdiff
2017-03-06
gmungoc
JAL-2428 separate TreeModel from TreeBuilder/NJTree...
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commitdiff
2017-02-17
gmungoc
JAL-2403 constants for "NJ", "AV"
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
2016-09-01
gmungoc
JAL-1421 add generics to NJTree, refactor recursive...
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
2012-10-03
jprocter
formatting
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commitdiff
2012-06-13
jprocter
javatidy
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commitdiff
2012-06-12
jprocter
JAL-1115 refactor base collection for Alignment from...
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
2010-09-23
jprocter
apply jalview code style
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
2009-06-08
jprocter
apply gpl development license
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commitdiff
2008-11-12
jprocter
refactored to propery separate addToDocument,addFromDoc...
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
2007-12-21
jprocter
bugfixes
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commitdiff
2007-10-24
jprocter
null pointer exception and warning for update of tree
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commitdiff
2007-09-28
jprocter
better support for TreeNode binding
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2007-09-25
jprocter
ascii file
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commitdiff
2007-08-30
jprocter
improved vamsas treenode node binding support
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commitdiff
2007-08-23
jprocter
proper vamsas style binding of alignment sequence objec...
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commitdiff
2007-07-25
jprocter
better vamsas tree io (for when there are no nodemappings)
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commitdiff
2007-07-13
jprocter
refactored form of vamsas document interaction code
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commitdiff
2007-06-17
jprocter
vamsas-client-1.2 schema (mappings and Treenodes) and...
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commitdiff