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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/ math
2024-08-05
Jim Procter
JAL-1551 gradle spotlessApply and doc tweaks
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commitdiff
2024-05-23
MorellThomas
Fix PaSiMap not having the eigenvalues saved
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commitdiff
2024-05-16
Jim Procter
Merge branch 'develop' into feature/JAL-4159_pasimap
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commitdiff
2024-04-18
MorellThomas
Merge branch 'test/progressBar' into feature/JAL-4159_p...
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2024-04-18
MorellThomas
Implemented ProgressBar for PaSiMap
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commitdiff
2024-04-12
MorellThomas
inlcude progress
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commitdiff
2024-03-07
MorellThomas
Inlcude 8 dimensions
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commitdiff
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-09-07
MorellThomas
Implemented least-squares optimisation in ccAnalysis
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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commitdiff
2023-08-04
MorellThomas
Fix alignment and score calculation for cc_analysis
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2019-04-04
gmungoc
JAL-3220 unneeded main methods removed
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commitdiff
2019-03-05
gmungoc
JAL-3205 added a delta parameter to Matrix.equals()
feature/JAL-3205symmetricCalc
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commitdiff
2019-03-03
gmungoc
JAL-3205 faster calculation with symmetric score matrix
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commitdiff
2018-05-02
gmungoc
JAL-1767 getters/setters for D and E vectors
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commitdiff
2018-05-01
gmungoc
JAL-1767 include d and e vectors in Matrix.copy()
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commitdiff
2018-04-27
gmungoc
JAL-1767 refactoring and tidying of RotatableCanvas...
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commitdiff
2018-04-25
gmungoc
JAL-1767 minor field tidying prior to functional changes
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
2017-08-16
Jim Procter
JAL-2418 add GPL to main sources
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2017-08-16
Jim Procter
JAL-2418 source formatting
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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commitdiff
2017-04-12
gmungoc
JAL-2403 ensure array held in Matrix is immutable
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commitdiff
2017-03-23
gmungoc
JAL-2397 scale PCA by PID to alignment width to match...
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commitdiff
2017-03-23
gmungoc
JAL-2393 code tidy and comments, PIDDistanceModel depre...
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commitdiff
2017-02-24
gmungoc
JAL-2403 JAL-1483 push 'reverseRange' inside Matrix
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commitdiff
2017-02-23
gmungoc
JAL-2403 additional methods to support distance/similar...
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commitdiff
2017-01-27
gmungoc
JAL-2379 commented out code removed
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2017-01-26
gmungoc
Merge branch 'develop' into features/JAL-2379pcaMemory
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commitdiff
2017-01-26
gmungoc
JAL-2380 code tidy after review
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commitdiff
2017-01-23
gmungoc
JAL-2379 made SparseMatrix.divide() so as to exactly...
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commitdiff
2017-01-17
gmungoc
JAL-2379 SparseMatrix alternative to Matrix, both MatrixI
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commitdiff
2017-01-16
gmungoc
JAL-2380 fix Matrix.postMultiply()
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for new files in src
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
2014-12-05
Charles Ofoegbu
Change the Html export to utilize svg
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commitdiff
2014-09-23
darolmar
JAL-1355
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
2014-02-25
Jim Procter
JAL-1454 increase max for tqli iterations and throw...
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
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2009-06-08
jprocter
apply gpl development license
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2008-09-04
jprocter
merge from 2_4_Release branch
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2007-02-07
amwaterhouse
Formatting
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2006-08-21
amwaterhouse
header updated
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2005-09-30
amwaterhouse
Remove redundancy in Eclipse
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2005-06-30
amwaterhouse
Formatting changes
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commitdiff
2005-06-08
amwaterhouse
Formatted source
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commitdiff
2005-06-08
amwaterhouse
GPL license added
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commitdiff
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
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commitdiff
2004-11-02
amwaterhouse
Jalview Imported Sources
start
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