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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / renderer / AnnotationRenderer.java
2024-09-16 Jim ProcterJAL-4392 autohide the secondary structure consensus... patch/JAL-4392_hide_ssconsensus_if_no_data commit | commitdiff
2024-08-05 Jim ProcterJAL-1551 gradle spotlessApply and doc tweaks commit | commitdiff
2024-05-15 Renia CorreyaJAL-4386 Added preferences for secondary structure... commit | commitdiff
2024-05-13 Renia CorreyaJAL-4386 - Implementation of substitution matrix and... commit | commitdiff
2024-04-30 Renia CorreyaJAL-4392 Merging consensus secondary structure commit | commitdiff
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-11-02 James ProcterMerge branch 'develop' into patch/JAL-3088_finalbraceno... commit | commitdiff
2023-09-16 Ben SoaresJAL-4250 Fixed blue arrows in drawStemAnnot() commit | commitdiff
2023-09-04 James ProcterJAL-3088 check for validEnd when working out whether... commit | commitdiff
2023-09-04 James ProcterJAL-4250 fix location and height for RNA secondary... commit | commitdiff
2023-09-04 James ProcterJAL-4250 rendition is way too obscure for me commit | commitdiff
2023-08-24 Ben SoaresJAL-4250 Fix bug in vector rendition where more than... improvement/JAL-4250_secondary_structure_annotation_antialias commit | commitdiff
2023-08-24 Ben SoaresJAL-4250 Much simplified glyph creation removing most... commit | commitdiff
2023-08-23 Ben SoaresJAL-4250 Updated jfreesvg to fix round stroke in linegraph. commit | commitdiff
2023-08-23 Ben SoaresJAL-4250 Simplification of polygons and adjustments... commit | commitdiff
2023-08-21 Ben SoaresJAL-4250 revert green to bright green commit | commitdiff
2023-08-21 Ben SoaresJAL-4250 Conservative setting of ANTIALIAS and readjust... commit | commitdiff
2023-08-18 Ben SoaresJAL-4250 Make secondary structure annotation shapes... commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply commit | commitdiff
2023-04-19 Ben SoaresJAL-629 Now showing temp fac and secondary structure... commit | commitdiff
2022-06-10 Jim ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2022-02-16 Jim ProcterMerge branch 'develop' into features/r2_11_2_alphafold... commit | commitdiff
2021-09-17 Jim ProcterJAL-3079 JAL-3055 remember to reset font transform... commit | commitdiff
2021-08-11 Jim ProcterMerge branch 'features/JAL-2349_matrixvis' into feature... commit | commitdiff
2020-08-13 gmungocJAL-3597 additional references nulled, bug in test... commit | commitdiff
2020-07-14 gmungocJAL-3597 additional references nulled, bug in test... commit | commitdiff
2019-06-18 Jim ProcterMerge branch 'features/JAL-2349_matrixvis' into merge... commit | commitdiff
2019-04-18 hansonrexplicit Hashtable objects commit | commitdiff
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate... commit | commitdiff
2019-03-27 hansonrisJS cleanup commit | commitdiff
2019-02-27 gmungocJAL-3202 reduced scope of rendering flags commit | commitdiff
2019-02-27 gmungocJAL-3202 discard zero percentages in extracted profile commit | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... commit | commitdiff
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... commit | commitdiff
2019-01-21 hansonrminor Platform.isAMac() clean up commit | commitdiff
2018-08-30 gmungocJAL-3055 refinements to alternatives to deriveFont commit | commitdiff
2018-08-28 gmungocJAL-3055 corrected logo drawing in JS commit | commitdiff
2018-08-28 gmungocJAL-3055 corrections to use of AffineTransform to scale... commit | commitdiff
2018-08-27 gmungocJAL-3055 restore original deriveFont code for Java... commit | commitdiff
2018-07-03 Jim ProcterJAL-2347 first pass at JAL-2347 - doesn’t quite work... commit | commitdiff
2018-06-27 hansonrConsensus LOGO done commit | commitdiff
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759 commit | commitdiff
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... commit | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest commit | commitdiff
2017-11-10 kiramtJAL-2827 related fixes for stem and non-canonical annot... bug/JAL-2827 commit | commitdiff
2017-11-09 kiramtJAL-2827 Fix notched repaint of helix annotation when... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-06-09 Jim ProcterMerge branch 'develop' into features/JAL-2349_matrixvis commit | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... commit | commitdiff
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code commit | commitdiff
2017-02-10 Jim ProcterMerge branch 'develop' into spike/matrix_annot commit | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... commit | commitdiff
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... commit | commitdiff
2017-01-06 gmungocJAL-2371 correct Clustal, Blosum, PID colouring of... commit | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI commit | commitdiff
2016-12-04 Jim ProcterJAL-2348 make debug message reporting renderer used... commit | commitdiff
2016-12-04 Jim ProcterJAL-2348 JAL-2349 refactored contact map renderer and... commit | commitdiff
2016-12-04 Jim ProcterJAL-2348 contact map renderer refactored from hacked... commit | commitdiff
2016-12-02 Jim Procterbasic hack to get (almost) equal height density plot commit | commitdiff
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns commit | commitdiff
2016-11-02 gmungocJAL-98 ProfileI interface for Profile commit | commitdiff
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... commit | commitdiff
2016-09-22 gmungocJAL-2216 explicitly null AnnotationPanel and Annotation... commit | commitdiff
2016-08-29 gmungocJAL-1841 robustness fix bug/JAL-1841rnaSecStr commit | commitdiff
2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr commit | commitdiff
2016-08-26 gmungocJAL-1854 comment switch case fallthrough commit | commitdiff
2016-08-12 gmungocJAL-1841 bug fixes / code tidy for rna SS rendering... commit | commitdiff
2016-04-04 Jim ProcterJAL-2001 drop isSelected(int) in favour of original... commit | commitdiff
2016-04-04 Jim ProcterJAL-2001 use fast column selection test commit | commitdiff
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-07-15 gmungocJAL-1813 only pair up A-Z with a-z if annotation is RNA commit | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop commit | commitdiff
2015-07-07 tcofoegbuJAL-1805 test envirionment separation commit | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-11-23 Jim Procteremploy test and secondary structure character for deter... commit | commitdiff
2014-11-23 Jim ProcterJAL-1569 formatting commit | commitdiff
2014-07-18 j.procter@dundee... JAL-1520 switch between Protein and non-canonical RNA... commit | commitdiff
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. commit | commitdiff
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch commit | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff
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