JAL-2446 merged to spike branch
[jalview.git] / src / jalview / viewmodel / AlignmentViewport.java
2017-06-09 gmungocJAL-2446 merged to spike branch
2016-12-04 Jim ProcterJAL-1933 switch from gap count to occupancy
2016-12-02 gmungocJAL-1933 gap value as description; minor formatting
2016-12-01 Jim ProcterJAL-1933 basic hack to get gap counts shown as an annot...
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi...
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold...
2016-11-02 gmungocJAL-98 ProfileI interface for Profile
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis...
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop
2016-10-26 gmungocJAL-98 null reference to globalColourScheme as it has...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-24 gmungocJAL-2283 set 'by conservation' correctly when changing...
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount...
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176...
2016-09-22 gmungocJAL-2216 new dispose() method to null references
2016-09-20 gmungocJAL-1306 calculate Quality also when Conservation not...
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157
2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSe...
2016-09-01 Jim ProcterJAL-2034 check context of selection group to catch...
2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method...
2016-07-20 gmungocJAL-2023 stronger check for whether to start cdna consensus
2016-07-14 Jim Procterfix for JAL-2147
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array
2016-06-02 tcofoegbuJAL-1944 java doc update and minor house keeping
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced...
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection...
2016-04-27 Jim ProcterJAL-2085 JAL-2086 fix hiddenRepSequence and new referen...
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during...
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset
2016-03-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-26 tcofoegbuJAL-1994 updated implementation for broken tests
2016-02-26 tcofoegbuJAL-1994 fix for broken tests
2016-02-25 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-22 tcofoegbuJAL-1944 bugfix for error when exporting hidden sequenc...
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin...
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe...
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-03 Jim ProcterJAL-961 TODO use workers for calculations supporting...
2015-09-03 Jim ProcterJAL-1551 source tidy
2015-08-17 gmungocJAL-1691 scan full width and depth of alignment for...
2015-06-30 gmungocJAL-1691 trackpad scrolling goes to full width even...
2015-06-19 Jim ProcterJAL-653 JAL-1780 dropped av.setHasHiddenRows() and...
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports
2015-06-10 tcofoegbuJAL-1641 updated applet version
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit...
2015-04-27 gmungocJAL-1691 more stable linked scrolling across split...
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5...
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences...
2015-04-01 gmungocJAL-1264 reinstate Show annotations menu item
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method
2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checki...
2015-01-23 Jim ProcterJAL-969 javadoc and mark interface overrides for clarity
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence...
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-17 gmungocJAL-1293 hide/show sequence annotations with hide/revea...
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-09-12 j.procter@dundee... JAL-1486 JAL-535 refactor code for trimming alignment...
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur...
2014-08-08 j.procter@dundee... JAL-1483 model and api for feature display list on...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-02 Jim ProcterMerge branch 'Release_2_8_1_Branch' into JAL-1372_refer...
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
2014-05-01 Jim ProcterJAL-961 store result of conservation analysis worker...
2014-04-21 Jim Procterdon't unhook existing group associated annotation JAL...
2014-04-21 Jim Procterdon't finness the alignment annotation modification...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-11 Jim ProcterJAL-1164 regression on JAL-1292 use bitset to mark...
2013-10-11 Jim ProcterJAL-1164 regression on JAL-1292 use bitset to mark...
2013-10-11 Jim ProcterJAL-1385 expose core view model methods in interface
2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings...
2013-10-07 Jim ProcterJAL-1385 expose core view model methods in interface
2013-08-30 Jim ProcterJAL-1367 allow reference sequence to be shown in bold...
2013-08-30 Jim ProcterJAL-1370 JAL-1371 flags for display and colour of view...
2013-06-23 Jim ProcterJAL-1230 simplify initialisation of consensus, conserva...
next