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JAL-3033 tarball from site
[jalview.git]
/
src
/
2018-06-26
Jim Procter
Merge branch 'develop' into Jalview-BH/JAL-3026
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3042 don't allow user to change default history...
tree
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commitdiff
2018-06-26
gmungoc
Merge branch 'Jalview-BH/JAL-3026' of https://source...
tree
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commitdiff
2018-06-26
gmungoc
JAL-3032 don't draw AlphaComposite.Clear on background
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commitdiff
2018-06-26
Jim Procter
Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
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commitdiff
2018-06-26
gmungoc
JAL-3032 updateOverviewImage on construction
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commitdiff
2018-06-26
gmungoc
JAL-3032 don't place desktop at negative x or y position
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commitdiff
2018-06-24
hansonr
Dialog motif:
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commitdiff
2018-06-24
hansonr
asynchronous modal dialogs using PropertyChangeListener...
tree
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commitdiff
2018-06-24
hansonr
JAL-3032
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commitdiff
2018-06-24
hansonr
AlignmentFrame opacity set to TRUE for JavaScript.
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commitdiff
2018-06-23
hansonr
org.json.simple
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commitdiff
2018-06-23
hansonr
JAL-3032 BrowserLauncher simplified for JS
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commitdiff
2018-06-23
hansonr
RELATIVE_URL
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commitdiff
2018-06-23
hansonr
Merge branch 'Jalview-BH/JAL-3026' of https://source...
tree
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commitdiff
2018-06-23
hansonr
JAL-3026 JDesktop/JInternalFrames support + relative...
tree
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commitdiff
2018-06-22
gmungoc
JAL-3032 avoid assignments on the same line as synchronized
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commitdiff
2018-06-22
gmungoc
Merge branch 'Jalview-BH/JAL-3026' of https://source...
tree
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commitdiff
2018-06-22
gmungoc
JAL-3030 size split frame taller
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commitdiff
2018-06-22
hansonr
Merge branch 'Jalview-BH/JAL-3026' of https://source...
tree
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commitdiff
2018-06-22
hansonr
fix for no access-control-origin on jalview site
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commitdiff
2018-06-22
gmungoc
JAL-3032 more informative failure message
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commitdiff
2018-06-21
gmungoc
JAL-3030 allow uncaught exceptions (for easier JS debuggin)
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commitdiff
2018-06-21
gmungoc
JAL-3030 try to open a split frame if file and file2...
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commitdiff
2018-06-21
gmungoc
JAL-3032 round Quality score for tooltip (as it becomes...
tree
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commitdiff
2018-06-20
hansonr
JAL-3032 for (var var
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commitdiff
2018-06-20
hansonr
SeqCanvas and OverviewCanvas
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commitdiff
2018-06-20
gmungoc
JAL-3032 simplified _LoadFileWaitTillLoaded with no...
tree
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commitdiff
2018-06-20
hansonr
JAL-3032 FileLoader fixes for SwingJS
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commitdiff
2018-06-20
hansonr
update of javajs package; adds org.apache.harmony,...
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commitdiff
2018-06-20
hansonr
Bob first commit JAL-3032
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commitdiff
2018-06-20
hansonr
MessageManager logger to log4j
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commitdiff
2018-06-20
gmungoc
JAL-3032 load properties as "java.properties"
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commitdiff
2018-06-20
gmungoc
JAL-3030 suppress change that goes with JAL-3031
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commitdiff
2018-06-20
gmungoc
JAL-3030 reads features file, properties file
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commitdiff
2018-06-19
gmungoc
JAL-3030 added menu bar
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commitdiff
2018-06-19
gmungoc
JAL-3030 first cut of JalviewJS.main entry point accept...
tree
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commitdiff
2018-06-18
hansonr
JAL-3026 adding javajs package
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commitdiff
2018-06-07
gmungoc
JAL-2755 correct Javadoc and error handling
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commitdiff
2018-06-06
gmungoc
JAL-3013 ensure Chimera as a symlink gets resolved
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commitdiff
2018-06-04
gmungoc
JAL-3019 correctly form toRange of 'traversed' MapList
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commitdiff
2018-06-04
gmungoc
JAL-3018 updated REST versions to 6.3
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commitdiff
2018-05-31
gmungoc
JAL-2808 don't capture or report min-max for mixed...
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commitdiff
2018-05-31
gmungoc
JAL-2808 pre-fill numeric inequality filter with min...
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commitdiff
2018-05-28
gmungoc
Merge branch 'bug/JAL-797' into develop
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commitdiff
2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2992panelHeight' into releases...
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-1460_dragndropWindows' into relea...
tree
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commitdiff
2018-05-25
gmungoc
JAL-2992 simpler heuristic for available height
bug/JAL-2992panelHeight
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2991_exporttosvgwrapview' into...
tree
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commitdiff
2018-05-25
Jim Procter
JAL-2994 add a few future release points for good measu...
feature/JAL-2994chimeraPath
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commitdiff
2018-05-25
Jim Procter
JAL-1460 temp variable for clearer conditional and...
bug/JAL-1460_dragndropWindows
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commitdiff
2018-05-25
Jim Procter
JAL-1460 javadoc
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commitdiff
2018-05-25
gmungoc
JAL-2995 tooltip on fields with double-click to browse...
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commitdiff
2018-05-25
gmungoc
JAL-2994 temporary patch with paths to Chimera for...
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commitdiff
2018-05-24
gmungoc
JAL-2997 additional tests
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commitdiff
2018-05-24
Jim Procter
JAL-1460 tidied up the use of windows link file parser
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commitdiff
2018-05-24
Jim Procter
JAL-1460 more complete drag'n'drop debugging info and...
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commitdiff
2018-05-24
Jim Procter
JAL-1460 process .lnk files dragged to Jalview when...
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commitdiff
2018-05-24
Jim Procter
JAL-1460 new data flavor for URLs added belt-and-braces...
tree
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commitdiff
2018-05-23
gmungoc
JAL-2993 AlignFrame listen for keystrokes in OverviewPanel
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commitdiff
2018-05-23
Jim Procter
fix for JAL-2991 - we could do better :/
bug/JAL-2991_exporttosvgwrapview
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commitdiff
2018-05-23
gmungoc
JAL-2997 handle tab-delimited trailing column number...
tree
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commitdiff
2018-05-21
gmungoc
JAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW
bug/JAL-797
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commitdiff
2018-05-11
gmungoc
JAL-2986 corrected findIndex for out of range residue...
tree
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commitdiff
2018-05-10
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
tree
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commitdiff
2018-05-10
Jim Procter
JAL-2920 simplified logic and added corner cases for...
tree
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commitdiff
2018-05-09
gmungoc
JAL-2984 add pdb as sequence(s) if associate structure...
tree
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commitdiff
2018-05-09
Jim Procter
Merge branch 'patch/JAL-2976_vaqua4_fallback' into...
tree
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commitdiff
2018-05-09
Jim Procter
JAL-2976 fixed bad equivalence check and implemented...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 ensure default is ‘parseImmediately=true’
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commitdiff
2018-05-07
Jim Procter
JAL-2321 use configured values for structure derived...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 add secondary structure & temp factor if not...
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commitdiff
2018-05-07
Jim Procter
JAL-2321 use StructureImportSettings singleton settings...
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commitdiff
2018-05-07
Jim Procter
JAL-2321 isParseImmediately() allows the parse() method...
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commitdiff
2018-05-07
Jim Procter
JAL-2321 allow JmolParser to be configured before parsi...
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2906 apply GPLv3 license source
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commitdiff
2018-05-07
Jim Procter
JAL-2960 don’t override a swing method and create infin...
tree
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commitdiff
2018-05-04
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
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commitdiff
2018-05-04
Jim Procter
JAL-2976 patch NPE when trying to open Uniprot FTS
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commitdiff
2018-05-04
Jim Procter
JAL-2948 transfer features/annotation is now available...
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commitdiff
2018-05-04
Jim Procter
JAL-2960 raise the structure view after adding structur...
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commitdiff
2018-05-02
Jim Procter
JAL-2976 fallback to Vaqua for Macs that don’t work...
tree
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commitdiff
2018-05-01
Jim Procter
JAL-2899 colouring moved from SwingWorker to a backgrou...
tree
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commitdiff
2018-04-30
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
tree
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commitdiff
2018-04-25
Jim Procter
Merge branch 'features/JAL-2944_openStructuresInSelecte...
tree
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commitdiff
2018-04-24
gmungoc
JAL-2959 no Print dialog shown if Page Format is Cancelled
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commitdiff
2018-04-23
gmungoc
JAL-2954 more efficient SearchResults.markColumns
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commitdiff
2018-04-23
gmungoc
JAL-2952 set negative TempFactor values as AlignmentAnn...
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commitdiff
2018-04-18
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-04-18
gmungoc
JAL-2593 render 'duplicate' features if transparency...
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commitdiff
2018-04-13
gmungoc
Merge branch 'features/JAL-2944_openStructuresInSelecte...
features/JAL-2944_openStructuresInSelectedView
tree
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commitdiff
2018-04-12
gmungoc
JAL-2223 don't add duplicate mappings to StructureSelec...
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commitdiff
2018-04-12
gmungoc
JAL-1847 minor post-review updates
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commitdiff
2018-04-12
gmungoc
JAL-2944 tidies for review comments
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commitdiff
2018-04-11
Jim Procter
JAL-2946 catch unexpected SIFTS mapping exceptions...
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commitdiff
2018-04-09
Jim Procter
JAL-2944 ’new view’ and ‘add to view’ button rather...
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commitdiff
2018-04-09
Jim Procter
JAL-1847 superpose checkbox in structure chooser
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commitdiff
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