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JAL-3033 and more classes for examples core
[jalview.git] / src /
2019-03-05 gmungocJAL-3049 JAL-3032 tidy/i18n code, remove redundant... tree | commitdiff
2019-03-05 gmungocJAL-3049 redo (part of) commit 92bc328 tree | commitdiff
2019-03-05 gmungocJAL-3054 small y-overlap of tooltip and cell leads... tree | commitdiff
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3049colour... tree | commitdiff
2019-03-05 gmungocJAL-3205 added a delta parameter to Matrix.equals() feature/JAL-3205symmetricCalc tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3072scrollThread' into merge... tree | commitdiff
2019-03-04 gmungocMerge remote-tracking branch 'origin/bug/JAL-3082select... tree | commitdiff
2019-03-04 gmungocJAL-3206 avoid divide by zero when threshold is graphMi... tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into... tree | commitdiff
2019-03-04 gmungocMerge remote-tracking branch 'origin/tasks/JAL-3035_rem... tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3120restoreFeatureColour' into... tree | commitdiff
2019-03-03 gmungocJAL-3205 faster calculation with symmetric score matrix tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-2791exportFilteredFeature' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'... tree | commitdiff
2019-03-01 gmungocMerge branch 'feature/JAL-1244stretchStatusMsg' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-3139colocatedFeatures' into develop tree | commitdiff
2019-03-01 gmungocJAL-3154 disable reorder columns before adding to viewport tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-3154tableColumnDrag' into develop tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-3161annotationTooltipRange' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-3158selectionBroadcasts' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-3164complementOverview' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'merge/JAL-3140' into develop tree | commitdiff
2019-03-01 gmungocJAL-3140 update for change to SequenceI api tree | commitdiff
2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL... tree | commitdiff
2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ tree | commitdiff
2019-02-28 gmungocJAL-3140 confine intervalstore imports to jalview.datam... tree | commitdiff
2019-02-28 gmungocMerge branch 'bug/JAL-2420revealAllMenu' into develop tree | commitdiff
2019-02-28 gmungocMerge branch 'bug/JAL-3166npeAllRowsHidden' into develop tree | commitdiff
2019-02-28 gmungocMerge branch 'feature/JAL-3169cancelOverwrite' into... tree | commitdiff
2019-02-28 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into merge... tree | commitdiff
2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_b... tree | commitdiff
2019-02-28 Jim ProcterMerge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 tree | commitdiff
2019-02-28 gmungocJAL-3032 any url parameter not "j2s..." taken as Jalvie... Jalview-BH/JAL-3026-JAL-3063-JAXB tree | commitdiff
2019-02-27 gmungocJAL-2527 default Overview 'hide hidden' i.e. WYSIWYG tree | commitdiff
2019-02-27 gmungocJAL-2527 default Overview 'hide hidden' i.e. WYSIWYG tree | commitdiff
2019-02-27 gmungocJAL-3202 reduced scope of rendering flags tree | commitdiff
2019-02-27 gmungocJAL-3202 discard zero percentages in extracted profile tree | commitdiff
2019-02-26 gmungocJAL-3201 JAL-2386 don't pre-select 'apply to all groups' tree | commitdiff
2019-02-26 gmungocJAL-3201 group colour schemes distinct instances tree | commitdiff
2019-02-25 gmungocJAL-3032 Jalview (as JS) parse query params to main... tree | commitdiff
2019-02-25 gmungocJAL-3032 JalviewJS2 converts url query parameters to... tree | commitdiff
2019-02-25 gmungocJAL-3200 fast lookup of DSSP3 notation tree | commitdiff
2019-02-24 gmungocJAL-3198 don't recalculate group conservation for Id... tree | commitdiff
2019-02-24 gmungocJAL-3198 SequenceGroup 'bulk constructor' without dupli... tree | commitdiff
2019-02-22 gmungocJAL-2915 don't recalculate Overview on scroll to positi... tree | commitdiff
2019-02-22 gmungocJAL-2738 don't set AF as feature score tree | commitdiff
2019-02-22 Ben SoaresJAL-3141 improved message for asking whether to delete... tree | commitdiff
2019-02-21 Ben SoaresJAL-3141 Sensible refactoring for confirming deleting... tree | commitdiff
2019-02-17 Ben SoaresJAL-3141 User warning when deleting old backup files... tree | commitdiff
2019-02-15 Ben SoaresJAL-3141 re-order deletion of old files and check lastM... tree | commitdiff
2019-02-14 Ben SoaresJAL-3141 Added warning/confirmation when suffixReverse... tree | commitdiff
2019-02-14 Ben SoaresJAL-3141 Moved 'Previously saved scheme' combo box... tree | commitdiff
2019-02-12 gmungocJAL-3032 default Autosearch to off for JalviewJS tree | commitdiff
2019-02-05 gmungocJAL-3032 check enough sequences selected on construction tree | commitdiff
2019-02-05 gmungocJAL-3048 JS-compatible confirm dialog on delete all tree | commitdiff
2019-02-04 hansonrSequenceFetcher JvCacheableInputBox isJS test tree | commitdiff
2019-02-04 hansonrrefactoring for DBMODList tree | commitdiff
2019-02-04 hansonradds protype size to JTextArea hack for nonexistent... tree | commitdiff
2019-02-04 hansonrfixing array processing order tree | commitdiff
2019-02-04 hansonrre-transpiled MIGLayout; JS-adapted AnnotationColumnChooser tree | commitdiff
2019-02-01 hansonrremoves unnecessary org.xml.sax; these are in SwingJS tree | commitdiff
2019-02-01 Ben SoaresJAL-3141 Slight efficiency gain in detecting backupfile... tree | commitdiff
2019-01-31 hansonrSplit pane removing title bar for JInternalFrames tree | commitdiff
2019-01-30 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of tree | commitdiff
2019-01-30 gmungocJAL-3144 don't change comma to semi-colon if not requested! tree | commitdiff
2019-01-30 hansonrwoops. tree | commitdiff
2019-01-30 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... tree | commitdiff
2019-01-30 hansonrfixes unidentified Java problem tree | commitdiff
2019-01-30 gmungocJAL-3056 no export as BioJS in JalviewJS tree | commitdiff
2019-01-30 Ben SoaresJAL-3141 Enabled the 'Include backpup files' checkbox... tree | commitdiff
2019-01-29 hansonrJSON writing fix, JColorChooser (mnemonic change) fix tree | commitdiff
2019-01-29 Ben SoaresJAL-3141 Found a good fix for updating the FileChooser... tree | commitdiff
2019-01-29 Ben SoaresJAL-3141 Found a (not ideal) fix for updating the FileC... tree | commitdiff
2019-01-29 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... tree | commitdiff
2019-01-29 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into trialMerge tree | commitdiff
2019-01-29 gmungocJAL-3143 format alleles array for feature description tree | commitdiff
2019-01-29 hansonriterators tree | commitdiff
2019-01-29 hansonrtime check, iterators tree | commitdiff
2019-01-29 hansonrJSON moved to swingjs/json tree | commitdiff
2019-01-29 hansonrJSON code moved to swingjs.json.JSON tree | commitdiff
2019-01-29 hansonrmore iterators out; some time checks tree | commitdiff
2019-01-28 gmungocJAL-3032 revert change to tooltip StringBuilder length tree | commitdiff
2019-01-28 Ben SoaresJAL-3141 improvement on BackupFilenameParts filename... tree | commitdiff
2019-01-26 hansonrPlatform.timecheck calls removed or commented out. tree | commitdiff
2019-01-26 hansonrremoving cyclic call tree | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... tree | commitdiff
2019-01-25 Ben SoaresJAL-3141. This adds quite a lot of code to allow an... tree | commitdiff
2019-01-25 hansonrtiming code tree | commitdiff
2019-01-25 hansonrJSON refactoring tree | commitdiff
2019-01-25 hansonrJavaScript browser-based JSON parsing tree | commitdiff
2019-01-24 Ben SoaresJAL-3141 Added a '.fa' to filename examples tree | commitdiff
2019-01-24 Ben SoaresJAL-3141 Change of label tree | commitdiff
2019-01-24 Ben SoaresJAL-3141 Removed border around example filenames in... tree | commitdiff
2019-01-24 Ben SoaresJAL-3141 New layout and wording of Backups Preferences... tree | commitdiff
2019-01-24 gmungocJAL-3018 Ensembl version updated to 9.0 tree | commitdiff
2019-01-24 hansonradds File..Load Project file for JS tree | commitdiff
2019-01-24 Ben SoaresJAL-3141 Reformatted code in eclipse tree | commitdiff
2019-01-23 hansonrMenus close properly, toolips restored tree | commitdiff
2019-01-23 Ben SoaresJAL-3141 Added Presets options in the Backups Preferenc... tree | commitdiff
2019-01-23 gmungocJAL-3063 correct handling of absent choice element... tree | commitdiff
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