Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / test / jalview / io / StockholmFileTest.java
2023-05-22 James ProcterJAL-1551 spotless
2023-05-19 James ProcterJAL-1551 spotlessApply
2023-05-17 James ProcterJAL-4184 failing test for description export and re...
2022-04-16 Jim ProcterJAL-3365 expand range of allowed DSSP secondary structu...
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2020-05-18 gmungocJAL-3529 test updated for revised signature of getDBRefs()
2020-04-14 Jim ProcterJAL-3529 revert ordering of DBRef addition so it reflec...
2020-03-06 Ben SoaresJAL-3529 improved regex in Stockholm UNIPROT accession...
2020-02-18 Jim ProcterJAL-3529 test for AC <Uniprot/EMBL> rather than DR...
2020-02-18 Jim ProcterJAL-3529 assert Uniprot refs must be provided as primar...
2020-02-14 Jim ProcterJAL-3529 more detailed asserts to detect whitespace...
2020-02-14 Jim ProcterJAL-3529 failing test for bug
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat...
2018-08-03 Ben SoaresJAL-3061
2018-08-02 Ben SoaresJAL-3053
2018-07-31 bsoaresStockholm file for test
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore...
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation...
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS...
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is...
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of...
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm...
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of...
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc...
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 format tests
2016-09-28 Jim ProcterJAL-2235 patch tests where self-reference was used...
2016-09-19 Jim ProcterJAL-2175 JAL-2170 fix sense for assertEquals
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-22 gmungocJAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip
2016-07-11 gmungocfile format enum wip changes
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-07 tcofoegbuJAL-1805 test envirionment separation
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac...
2015-06-22 Jim ProcterJAL-1270 fix logic in stockholm test allowing annotatio...
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-19 tcofoegbuJAL-1270 test suits import order refactor features/JAL-1270_JUnit-to-TestNG features/JAL-1782_JUnit-to-TestNG
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring
2015-06-15 Jim ProcterJAL-1665 patch for regression: failing jalview.ws.jabaw...
2015-06-15 Jim ProcterJAL-1665 patch for regression: failing jalview.ws.jabaw...
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-23 Jim ProcterJAL-1569 revise tests to count number and type of annot...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-06-21 Jim ProcterJAL-1325 formatting
2013-06-21 Jim ProcterJAL-1294 JAL-1325 test annotation threshold line equiva...
2013-05-24 Jim ProcterJAL-1295 relaxed test for Annotation element equivalenc...
2013-05-24 Jim ProcterJAL-1295 JAL-1296 clearer assertion failed message
2013-05-24 Jim ProcterJAL-1295 JAL-1297 enhance test to check graph visiblity...
2013-05-24 Jim ProcterJAL-1291 JAL-1297 JAL-1295 JAL-1294 allow alignment...
2013-05-24 Jim ProcterJAL-1297 JAL-1295 JAL-1294 improve test logic for compa...
2013-05-21 Jim Proctersplit test for general Stockholm IO consistency (JAL... JAL-1199-Stk_writing
2013-05-21 Jim ProcterJAL-1199 JAL-1272 remove main() method from test class
2013-05-21 Jim Procterformatting
2013-05-21 Jim ProcterJAL-1199 JAL-1272 refactored Natasha's test to a generi...
2013-02-15 Jim Proctersplit test for general Stockholm IO consistency (JAL...
2013-02-15 Jim ProcterJAL-1199 JAL-1272 remove main() method from test class
2013-02-15 Jim Procterformatting
2013-02-15 Jim ProcterJAL-1199 JAL-1272 refactored Natasha's test to a generi...
2013-02-06 jprocterJAL-1199 added test for Rfam Stockholm file example
2013-02-06 jprocterJAL-1199 refactored stockholm test code from main class...