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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
test
/
jalview
/
io
/ StockholmFileTest.java
2023-05-22
James Procter
JAL-1551 spotless
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
2023-05-17
James Procter
JAL-4184 failing test for description export and re...
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commitdiff
2022-04-16
Jim Procter
JAL-3365 expand range of allowed DSSP secondary structu...
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2020-05-18
gmungoc
JAL-3529 test updated for revised signature of getDBRefs()
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commitdiff
2020-04-14
Jim Procter
JAL-3529 revert ordering of DBRef addition so it reflec...
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commitdiff
2020-03-06
Ben Soares
JAL-3529 improved regex in Stockholm UNIPROT accession...
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commitdiff
2020-02-18
Jim Procter
JAL-3529 test for AC <Uniprot/EMBL> rather than DR...
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commitdiff
2020-02-18
Jim Procter
JAL-3529 assert Uniprot refs must be provided as primar...
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commitdiff
2020-02-14
Jim Procter
JAL-3529 more detailed asserts to detect whitespace...
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commitdiff
2020-02-14
Jim Procter
JAL-3529 failing test for bug
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commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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commitdiff
2018-08-03
Ben Soares
JAL-3061
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commitdiff
2018-08-02
Ben Soares
JAL-3053
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commitdiff
2018-07-31
bsoares
Stockholm file for test
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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commitdiff
2017-05-25
gmungoc
JAL-2557 removal of Sequence.sequenceFeatures
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commitdiff
2017-05-15
Jim Procter
JAL-2507 - required callers to specify exact ignore...
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commitdiff
2017-05-11
Jim Procter
JAL-2507 JAL-2509 allow whitespace==null for annotation...
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commitdiff
2017-05-09
Jim Procter
JAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS...
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commitdiff
2017-05-09
Jim Procter
JAL-2509 verify stockholm parser’s bracket regex is...
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commitdiff
2017-05-09
Jim Procter
JAL-2507 JAL-2509 extend test to cover round trip of...
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commitdiff
2017-05-09
Jim Procter
JAL-2507 simplify round trip test via AppletFormatAdapter
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commitdiff
2017-05-09
Jim Procter
JAL-2507 test for alignment+rna annotation -> Stockholm...
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commitdiff
2017-05-04
Jim Procter
JAL-2507 JAL-2509 allow differences in visibility of...
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commitdiff
2017-05-04
Jim Procter
JAL-2507 JAL-2509 new assert to compare secondary struc...
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commitdiff
2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2016-11-24
tcofoegbu
JAL-2326 added setup method for JvOptionPane in all...
features/JAL-2326_JOptionPane-refactoring
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
2016-10-05
Jim Procter
JAL-2189 format tests
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commitdiff
2016-09-28
Jim Procter
JAL-2235 patch tests where self-reference was used...
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commitdiff
2016-09-19
Jim Procter
JAL-2175 JAL-2170 fix sense for assertEquals
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
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commitdiff
2016-08-22
gmungoc
JAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
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commitdiff
2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
2015-08-07
tcofoegbu
JAL-1824 updated caching procedure for pdb entries...
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commitdiff
2015-07-08
gmungoc
JAL-1759 merge from develop
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commitdiff
2015-07-07
tcofoegbu
JAL-1805 test envirionment separation
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commitdiff
2015-06-23
Jim Procter
JAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac...
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2015-06-22
Jim Procter
JAL-1270 fix logic in stockholm test allowing annotatio...
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commitdiff
2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
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commitdiff
2015-06-19
tcofoegbu
JAL-1270 test suits import order refactor
features/JAL-1270_JUnit-to-TestNG
features/JAL-1782_JUnit-to-TestNG
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commitdiff
2015-06-19
tcofoegbu
JAL-1270 JUnit to TestNG refactoring
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commitdiff
2015-06-15
Jim Procter
JAL-1665 patch for regression: failing jalview.ws.jabaw...
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commitdiff
2015-06-15
Jim Procter
JAL-1665 patch for regression: failing jalview.ws.jabaw...
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
2014-11-23
Jim Procter
JAL-1569 revise tests to count number and type of annot...
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2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
2013-06-21
Jim Procter
JAL-1325 formatting
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commitdiff
2013-06-21
Jim Procter
JAL-1294 JAL-1325 test annotation threshold line equiva...
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2013-05-24
Jim Procter
JAL-1295 relaxed test for Annotation element equivalenc...
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commitdiff
2013-05-24
Jim Procter
JAL-1295 JAL-1296 clearer assertion failed message
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commitdiff
2013-05-24
Jim Procter
JAL-1295 JAL-1297 enhance test to check graph visiblity...
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commitdiff
2013-05-24
Jim Procter
JAL-1291 JAL-1297 JAL-1295 JAL-1294 allow alignment...
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commitdiff
2013-05-24
Jim Procter
JAL-1297 JAL-1295 JAL-1294 improve test logic for compa...
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commitdiff
2013-05-21
Jim Procter
split test for general Stockholm IO consistency (JAL...
JAL-1199-Stk_writing
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commitdiff
2013-05-21
Jim Procter
JAL-1199 JAL-1272 remove main() method from test class
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commitdiff
2013-05-21
Jim Procter
formatting
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commitdiff
2013-05-21
Jim Procter
JAL-1199 JAL-1272 refactored Natasha's test to a generi...
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commitdiff
2013-02-15
Jim Procter
split test for general Stockholm IO consistency (JAL...
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commitdiff
2013-02-15
Jim Procter
JAL-1199 JAL-1272 remove main() method from test class
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commitdiff
2013-02-15
Jim Procter
formatting
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commitdiff
2013-02-15
Jim Procter
JAL-1199 JAL-1272 refactored Natasha's test to a generi...
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commitdiff
2013-02-06
jprocter
JAL-1199 added test for Rfam Stockholm file example
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commitdiff
2013-02-06
jprocter
JAL-1199 refactored stockholm test code from main class...
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