jalview.git
3 years agoJAL-3594 Default values for channel properties defined in code as fallback
Ben Soares [Sat, 5 Dec 2020 21:17:33 +0000 (21:17 +0000)]
JAL-3594 Default values for channel properties defined in code as fallback

3 years agoJAL-3594 Added rotating logo png
Ben Soares [Fri, 4 Dec 2020 18:52:37 +0000 (18:52 +0000)]
JAL-3594 Added rotating logo png

3 years agoJAL-3594 New jalview.util.ChannelProperties to get/cache values and images used in...
Ben Soares [Fri, 4 Dec 2020 17:16:39 +0000 (17:16 +0000)]
JAL-3594 New jalview.util.ChannelProperties to get/cache values and images used in the application. Starting to tidy images in resources/images.

3 years agoJAL-3594 Generating GIMP XCF files for getdown and new release getdown images
Ben Soares [Fri, 4 Dec 2020 11:09:12 +0000 (11:09 +0000)]
JAL-3594 Generating GIMP XCF files for getdown and new release getdown images

3 years agoJAL-3594 Release images and channel properties
Ben Soares [Fri, 4 Dec 2020 00:56:40 +0000 (00:56 +0000)]
JAL-3594 Release images and channel properties

3 years agoJAL-3594 New way for build.gradle to override properties with channel based propertie...
Ben Soares [Thu, 3 Dec 2020 22:51:23 +0000 (22:51 +0000)]
JAL-3594 New way for build.gradle to override properties with channel based properties files. Starting to tidy up some old image files

3 years agoJAL-3594 new logos, icons and cosmetics for getdown and install4j
Ben Soares [Wed, 2 Dec 2020 14:01:25 +0000 (14:01 +0000)]
JAL-3594 new logos, icons and cosmetics for getdown and install4j

3 years agoJAL-3594 Different icon/getdown styling when launching jalview built with -PCHANNEL...
Ben Soares [Fri, 18 Sep 2020 11:09:36 +0000 (12:09 +0100)]
JAL-3594 Different icon/getdown styling when launching jalview built with -PCHANNEL=DEVELOP

3 years agoJAL-3660 Fix for specified output format when using command line arg to convert a...
Ben Soares [Fri, 27 Nov 2020 17:24:08 +0000 (17:24 +0000)]
JAL-3660 Fix for specified output format when using command line arg to convert a file

4 years agoJAL-3248 Added mention of version 'TEST' in shadow jar filename in building.md/html...
Ben Soares [Thu, 29 Oct 2020 14:26:45 +0000 (14:26 +0000)]
JAL-3248 Added mention of version 'TEST' in shadow jar filename in building.md/html since develop branch currently uses this by default.

4 years agoJAL-3248 Fixed path typos in building.md/html and corrected shadow jar filename
Ben Soares [Thu, 29 Oct 2020 14:19:51 +0000 (14:19 +0000)]
JAL-3248 Fixed path typos in building.md/html and corrected shadow jar filename

4 years agoJAL-3760 fix tests for changed behaviour
Jim Procter [Tue, 29 Sep 2020 15:41:39 +0000 (16:41 +0100)]
JAL-3760 fix tests for changed behaviour

4 years agoJAL-3760 refactor nucleotide proportion test to per-sequence and return false if...
Jim Procter [Tue, 29 Sep 2020 14:26:34 +0000 (15:26 +0100)]
JAL-3760 refactor nucleotide proportion test to per-sequence and return false if any sequence appears protein-like

4 years agoMerge branch 'portforward/JAL-3765_patch_to_2112' into develop
Jim Procter [Wed, 28 Oct 2020 16:04:52 +0000 (16:04 +0000)]
Merge branch 'portforward/JAL-3765_patch_to_2112' into develop

4 years agoJAL-3765 fix test
Jim Procter [Tue, 20 Oct 2020 16:23:30 +0000 (17:23 +0100)]
JAL-3765 fix test

4 years agofix for JAL-3765
Jim Procter [Tue, 20 Oct 2020 16:13:33 +0000 (17:13 +0100)]
fix for JAL-3765

4 years agoJAL-3248 Added step to create the eclipse files before project import. Noted non...
Ben Soares [Wed, 28 Oct 2020 12:18:59 +0000 (12:18 +0000)]
JAL-3248 Added step to create the eclipse files before project import. Noted non-fatal NPEs during build with gradle 6.6+

Cherry pick from release, generated new building.html as it's a different process. Also added in a "**/*.md" into build.gradle (wasn't finding anything with "*.md")

4 years agoMerge branch 'develop' into blocker/JAL-3611_space_character_in_jalview_install_path
Ben Soares [Thu, 15 Oct 2020 14:01:19 +0000 (15:01 +0100)]
Merge branch 'develop' into blocker/JAL-3611_space_character_in_jalview_install_path

4 years agoJAL-3753 ensure correct dependencies for shadowJar task
Ben Soares [Mon, 28 Sep 2020 15:57:51 +0000 (16:57 +0100)]
JAL-3753 ensure correct dependencies for shadowJar task

4 years agoMerge branch 'develop' into bug/JAL-3753_resources_duplicated_in_jalview_jar
Ben Soares [Mon, 28 Sep 2020 11:12:47 +0000 (12:12 +0100)]
Merge branch 'develop' into bug/JAL-3753_resources_duplicated_in_jalview_jar

4 years agoJAL-3577 Removed default JALVIEW_VERSION from gradle.properties. Now being set by...
Ben Soares [Fri, 25 Sep 2020 08:39:02 +0000 (09:39 +0100)]
JAL-3577 Removed default JALVIEW_VERSION from gradle.properties. Now being set by build.gradle

4 years agoJAL-3577 Quick fix adding quotation marks for findProperty("JALVIEW_VERSION")==null...
Ben Soares [Thu, 24 Sep 2020 17:16:17 +0000 (18:16 +0100)]
JAL-3577 Quick fix adding quotation marks for findProperty("JALVIEW_VERSION")==null...

4 years agoMerge branch 'develop' into bug/JAL-3753_resources_duplicated_in_jalview_jar
Ben Soares [Wed, 23 Sep 2020 16:19:01 +0000 (17:19 +0100)]
Merge branch 'develop' into bug/JAL-3753_resources_duplicated_in_jalview_jar

4 years agoJAL-3477 Added 10k leeway to amount of memory reserved for OS test for float rounding...
Ben Soares [Wed, 23 Sep 2020 15:49:00 +0000 (16:49 +0100)]
JAL-3477 Added 10k leeway to amount of memory reserved for OS test for float rounding errors (needed to fix failing test)

4 years agoJAL-3753 Resources seen in tests and appropriate filters now being used as file opt...
Ben Soares [Wed, 23 Sep 2020 15:48:01 +0000 (16:48 +0100)]
JAL-3753 Resources seen in tests and appropriate filters now being used as file opt-in rather than opt-out.

4 years agoMerge branch 'merge_review/JAL-3490_2_11_2_develop' into develop
Jim Procter [Mon, 21 Sep 2020 11:01:51 +0000 (12:01 +0100)]
Merge branch 'merge_review/JAL-3490_2_11_2_develop' into develop

4 years agoJAL-3753 put resources in gradle run and test path
Ben Soares [Sun, 20 Sep 2020 19:33:16 +0000 (20:33 +0100)]
JAL-3753 put resources in gradle run and test path

4 years agoJAL-3753 JAL-3754 first rejig
Ben Soares [Fri, 18 Sep 2020 17:18:51 +0000 (18:18 +0100)]
JAL-3753 JAL-3754 first rejig

4 years agoMerge branch 'develop' of https://source.jalview.org/git/jalview into develop
Ben Soares [Mon, 14 Sep 2020 22:24:59 +0000 (23:24 +0100)]
Merge branch 'develop' of https://source.jalview.org/git/jalview into develop

4 years agoJAL-3718 force re-initialise of getdown.txt file when new getdown.txt downloaded...
Ben Soares [Mon, 14 Sep 2020 22:23:43 +0000 (23:23 +0100)]
JAL-3718 force re-initialise of getdown.txt file when new getdown.txt downloaded from appbase. getdown jar and version files

4 years agoJAL-3718 force re-initialise of getdown.txt file when new getdown.txt downloaded...
Ben Soares [Mon, 14 Sep 2020 22:23:11 +0000 (23:23 +0100)]
JAL-3718 force re-initialise of getdown.txt file when new getdown.txt downloaded from appbase. getdown src files

4 years agoMerge branch 'feature/JAL-3615gzipXfam' into develop
Ben Soares [Mon, 14 Sep 2020 17:11:09 +0000 (18:11 +0100)]
Merge branch 'feature/JAL-3615gzipXfam' into develop

4 years agoJAL-3609 HiDPI scale setting done via system prop in getdown or halview.bin.Launcher
Ben Soares [Fri, 15 May 2020 20:04:39 +0000 (21:04 +0100)]
JAL-3609 HiDPI scale setting done via system prop in getdown or halview.bin.Launcher

4 years agoJAL-3679 Added externally specified plugins dir to J2sPlugin check
Ben Soares [Fri, 4 Sep 2020 17:29:41 +0000 (18:29 +0100)]
JAL-3679 Added externally specified plugins dir to J2sPlugin check

4 years agoJAL-3746 bump release version for 2.11.2 series (currently on develop)
Jim Procter [Thu, 10 Sep 2020 16:41:19 +0000 (17:41 +0100)]
JAL-3746 bump release version for 2.11.2 series (currently on develop)

4 years agoJAL-3518 removed unneeded override in ChimeraCommands
gmungoc [Mon, 31 Aug 2020 15:46:54 +0000 (16:46 +0100)]
JAL-3518 removed unneeded override in ChimeraCommands

4 years agoJAL-3679 Added externally specified plugins dir to J2sPlugin check feature/JAL-3615gzipXfam
Ben Soares [Fri, 4 Sep 2020 17:29:41 +0000 (18:29 +0100)]
JAL-3679 Added externally specified plugins dir to J2sPlugin check

4 years agoJAL-3648 resize annotation panel after dragging to resize graph height
gmungoc [Thu, 18 Jun 2020 14:43:51 +0000 (15:43 +0100)]
JAL-3648 resize annotation panel after dragging to resize graph height

4 years agoMerge branch 'develop' of https://source.jalview.org/git/jalview into develop
Ben Soares [Thu, 3 Sep 2020 15:27:44 +0000 (16:27 +0100)]
Merge branch 'develop' of https://source.jalview.org/git/jalview into develop

4 years agoJAL-3680 merged description of individual cursor key actions
Jim Procter [Mon, 31 Aug 2020 17:05:59 +0000 (18:05 +0100)]
JAL-3680 merged description of individual cursor key actions

4 years agoJAL-3732 - sequences can be moved up/down in cursor mode via alt-up/down arrow
Jim Procter [Mon, 31 Aug 2020 16:49:18 +0000 (17:49 +0100)]
JAL-3732 - sequences can be moved up/down in cursor mode via alt-up/down arrow
JAL-3733 TODO - provide an undo for sequence/group up/down moves

4 years agoJAL-3018 Ensembl reviewed REST version updated to 13.0
gmungoc [Mon, 31 Aug 2020 15:10:57 +0000 (16:10 +0100)]
JAL-3018 Ensembl reviewed REST version updated to 13.0

4 years agoJAL-1191 use Cache.log for logging
gmungoc [Mon, 31 Aug 2020 15:00:22 +0000 (16:00 +0100)]
JAL-1191 use Cache.log for logging

4 years agoJAL-1191 reduce logging level for warnings
gmungoc [Thu, 4 Jun 2020 16:22:29 +0000 (17:22 +0100)]
JAL-1191 reduce logging level for warnings

4 years agoJAL-3018 updated reviewed REST version to 12.0
gmungoc [Mon, 24 Aug 2020 10:00:33 +0000 (11:00 +0100)]
JAL-3018 updated reviewed REST version to 12.0

4 years agoJAL-3615 code tidy, improve unit test
Jim Procter [Fri, 21 Aug 2020 10:37:27 +0000 (11:37 +0100)]
JAL-3615 code tidy, improve unit test

4 years agoJAL-2656 better read of (potential) gzip magic bytes
Ben Soares [Thu, 20 Aug 2020 13:55:50 +0000 (14:55 +0100)]
JAL-2656 better read of (potential) gzip magic bytes

4 years agoJAL-2656 Java 8 compatible test for gzipped, refactored for unit test
gmungoc [Tue, 18 Aug 2020 16:07:21 +0000 (17:07 +0100)]
JAL-2656 Java 8 compatible test for gzipped, refactored for unit test

4 years agoJAL-3490 don't init the combo box's history cache for JS execution
Jim Procter [Mon, 17 Aug 2020 14:53:20 +0000 (15:53 +0100)]
JAL-3490 don't init the combo box's history cache for JS execution

4 years agoJAL-3490 merged with 2.11.2 develop
Jim Procter [Mon, 17 Aug 2020 12:53:00 +0000 (13:53 +0100)]
JAL-3490 merged with 2.11.2 develop

4 years agoMerge branch 'task/JAL-3597memoryLeakTest' into develop
Jim Procter [Mon, 17 Aug 2020 09:55:48 +0000 (10:55 +0100)]
Merge branch 'task/JAL-3597memoryLeakTest' into develop

4 years agoJAL-3597 Increased heap passmark to <= 45MB and report smallest of failed attempts...
Ben Soares [Thu, 13 Aug 2020 22:05:00 +0000 (23:05 +0100)]
JAL-3597 Increased heap passmark to <= 45MB and report smallest of failed attempts heap size

4 years agoMerge branch 'develop' of https://source.jalview.org/git/jalview into develop
Ben Soares [Wed, 12 Aug 2020 11:00:57 +0000 (12:00 +0100)]
Merge branch 'develop' of https://source.jalview.org/git/jalview into develop

4 years agoMerge branch 'task/JAL-3608_property_set_laf_and_tests' into develop
Jim Procter [Wed, 12 Aug 2020 10:15:54 +0000 (11:15 +0100)]
Merge branch 'task/JAL-3608_property_set_laf_and_tests' into develop

4 years agoJAL-3691 Changed .toUppoerCase().startsWith(...) to .regionMatches(true,...) as upper...
Ben Soares [Wed, 5 Aug 2020 21:57:13 +0000 (22:57 +0100)]
JAL-3691 Changed .toUppoerCase().startsWith(...) to .regionMatches(true,...) as upper-cased 'i' in Turkish is not 'I'.

4 years agoJAL-3477 Improved command line arguments description in memory.html
Ben Soares [Tue, 4 Aug 2020 18:30:47 +0000 (19:30 +0100)]
JAL-3477 Improved command line arguments description in memory.html

4 years agoJAL-3477 Added -help text for jvmmempc and jvmmemmax. Fixed typo and slight rewording...
Ben Soares [Tue, 4 Aug 2020 17:13:02 +0000 (18:13 +0100)]
JAL-3477 Added -help text for jvmmempc and jvmmemmax. Fixed typo and slight rewording in help/memory.html

4 years agoJAL-3477 added help documentation for executable jar command line arguments -jvmmempc...
Ben Soares [Mon, 3 Aug 2020 10:20:05 +0000 (11:20 +0100)]
JAL-3477 added help documentation for executable jar command line arguments -jvmmempc and -jvmmemmax

4 years agoMerge branch 'bug/JAL-2983negativeSliderMin' into develop
Jim Procter [Mon, 3 Aug 2020 09:40:46 +0000 (10:40 +0100)]
Merge branch 'bug/JAL-2983negativeSliderMin' into develop

 Conflicts:
src/jalview/gui/FeatureSettings.java
src/jalview/gui/FeatureTypeSettings.java

4 years agoJAL-3371 JAL-2983 don't modify 'extent' of slider - this is managed by look and feel
Jim Procter [Wed, 29 Jul 2020 17:47:40 +0000 (18:47 +0100)]
JAL-3371 JAL-2983 don't modify 'extent' of slider - this is managed by look and feel

4 years agoMerge branch 'feature/JAL-3615gzipXfam' into develop
Jim Procter [Tue, 28 Jul 2020 12:36:00 +0000 (13:36 +0100)]
Merge branch 'feature/JAL-3615gzipXfam' into develop

4 years agoJAL-3615 JAL-2656 missing import after cherrypick
Jim Procter [Tue, 28 Jul 2020 11:17:37 +0000 (12:17 +0100)]
JAL-3615 JAL-2656 missing import after cherrypick

4 years agoJAL-2656 recognise non-HTTP URI input streams as gzipped by detecting the gzip magic...
Jim Procter [Tue, 28 Jul 2020 10:32:46 +0000 (11:32 +0100)]
JAL-2656 recognise non-HTTP URI input streams as gzipped by detecting the gzip magic header

4 years agoJAL-2656 recognise Gzipped file input streams by their content, not their filename
Jim Procter [Tue, 28 Jul 2020 10:29:20 +0000 (11:29 +0100)]
JAL-2656 recognise Gzipped file input streams by their content, not their filename

Conflicts:
src/jalview/io/FileParse.java
cherypicked from 2.11.1.1 release patch

4 years agoJAL-3615 update tests for Rfam/Pfam specific gzip endpoints
Jim Procter [Tue, 28 Jul 2020 10:18:56 +0000 (11:18 +0100)]
JAL-3615 update tests for Rfam/Pfam specific gzip endpoints

4 years agoJAL-3697 show total number of features not shown
Jim Procter [Mon, 27 Jul 2020 14:10:11 +0000 (15:10 +0100)]
JAL-3697 show total number of features not shown

4 years agoJAL-3696 log the error message from the exception to the console
Jim Procter [Mon, 27 Jul 2020 14:05:30 +0000 (15:05 +0100)]
JAL-3696 log the error message from the exception to the console

4 years agoJAL-3695 htsjdk 2.12 -> 2.23 (library change only, no code change. needs gradle refre...
Jim Procter [Mon, 27 Jul 2020 13:59:51 +0000 (14:59 +0100)]
JAL-3695 htsjdk 2.12 -> 2.23 (library change only, no code change. needs gradle refresh in eclipse)

4 years agoJAL-3597 slight tidying of code and Javadoc, passmark now heap <= 38MB
gmungoc [Mon, 20 Jul 2020 08:17:29 +0000 (09:17 +0100)]
JAL-3597 slight tidying of code and Javadoc, passmark now heap <= 38MB

4 years agoJAL-1421 last change tidied up properly
gmungoc [Tue, 14 Jul 2020 16:08:01 +0000 (17:08 +0100)]
JAL-1421 last change tidied up properly

4 years agoJAL-1421 types added to nameHash and nodeHash maps
gmungoc [Tue, 14 Jul 2020 08:44:46 +0000 (09:44 +0100)]
JAL-1421 types added to nameHash and nodeHash maps

4 years agoJAL-3597 additional references nulled, bug in test corrected
gmungoc [Tue, 14 Jul 2020 08:43:50 +0000 (09:43 +0100)]
JAL-3597 additional references nulled, bug in test corrected

4 years agoJAL-3608 Changes from code review CR-JAL-236
Ben Soares [Tue, 7 Jul 2020 23:47:55 +0000 (00:47 +0100)]
JAL-3608 Changes from code review  CR-JAL-236

4 years agoJAL-1424 streamlined message checker, corrected applet lookup keys
gmungoc [Tue, 7 Jul 2020 07:50:54 +0000 (08:50 +0100)]
JAL-1424 streamlined message checker, corrected applet lookup keys

4 years agoJAL-1424 slight tidying of reporting
gmungoc [Mon, 6 Jul 2020 14:59:53 +0000 (15:59 +0100)]
JAL-1424 slight tidying of reporting

4 years agoJAL-3311 JAL-3141 JAL-3144 tidying obsolete message bundle entries
gmungoc [Mon, 6 Jul 2020 14:57:57 +0000 (15:57 +0100)]
JAL-3311 JAL-3141 JAL-3144 tidying obsolete message bundle entries

4 years agoJAL-3518 Spanish text for 'write features'
gmungoc [Mon, 6 Jul 2020 11:57:24 +0000 (12:57 +0100)]
JAL-3518 Spanish text for 'write features'

4 years agoJAL-3570 JAL-3187 spanish translations for tabbed feature settings
gmungoc [Mon, 6 Jul 2020 11:37:41 +0000 (12:37 +0100)]
JAL-3570 JAL-3187 spanish translations for tabbed feature settings

4 years agoJAL-3570 updated external help links
gmungoc [Mon, 6 Jul 2020 09:05:25 +0000 (10:05 +0100)]
JAL-3570 updated external help links

4 years agoJAL-2656 JAL-3615 check response headers to test for gzipped url reply
gmungoc [Thu, 2 Jul 2020 16:24:28 +0000 (17:24 +0100)]
JAL-2656 JAL-3615 check response headers to test for gzipped url reply

4 years agoJAL-3615 used gzip endpoints for Pfam and Rfam
gmungoc [Thu, 2 Jul 2020 14:28:36 +0000 (15:28 +0100)]
JAL-3615 used gzip endpoints for Pfam and Rfam

4 years agoMerge branch 'develop' of http://source.jalview.org/git/jalview into develop
Jim Procter [Mon, 29 Jun 2020 16:50:24 +0000 (17:50 +0100)]
Merge branch 'develop' of source.jalview.org/git/jalview into develop

4 years agoJAL-3675 2.11.1.1 release notes
Jim Procter [Mon, 29 Jun 2020 16:46:57 +0000 (17:46 +0100)]
JAL-3675 2.11.1.1 release notes

4 years agoJAL-3493 clear search highlights when escape/deselect all
Jim Procter [Mon, 29 Jun 2020 16:24:29 +0000 (17:24 +0100)]
JAL-3493 clear search highlights when escape/deselect all

4 years agoJAL-3493 failing test - creates a highlight and column selection and then called...
Jim Procter [Mon, 29 Jun 2020 16:19:19 +0000 (17:19 +0100)]
JAL-3493 failing test - creates a highlight and column selection and then called the deselect all alignfjame action and checks if highlight and selection are still present.
 Conflicts:
test/jalview/gui/SeqCanvasTest.java

4 years agoJAL-3674 more finessed asynchronous structure commands
gmungoc [Mon, 29 Jun 2020 15:53:51 +0000 (16:53 +0100)]
JAL-3674 more finessed asynchronous structure commands

4 years agoMerge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
gmungoc [Mon, 29 Jun 2020 10:55:14 +0000 (11:55 +0100)]
Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop

4 years agoJAL-3518 corrected pulled up focusView() command
gmungoc [Mon, 29 Jun 2020 10:04:05 +0000 (11:04 +0100)]
JAL-3518 corrected pulled up focusView() command

4 years agoJAL-3518 corrected action on pulled up closeViewer()
gmungoc [Mon, 29 Jun 2020 10:03:39 +0000 (11:03 +0100)]
JAL-3518 corrected action on pulled up closeViewer()

4 years agoJAL-3551 PyMOL command constants tidied
gmungoc [Sun, 28 Jun 2020 10:42:02 +0000 (11:42 +0100)]
JAL-3551 PyMOL command constants tidied

4 years agoJAL-3551 fit to window (zoom) command for PyMOL
gmungoc [Sun, 28 Jun 2020 10:27:02 +0000 (11:27 +0100)]
JAL-3551 fit to window (zoom) command for PyMOL

4 years agoJAL-3673 make sure font metrics are updated if dealing with reference sequence font !
Jim Procter [Fri, 26 Jun 2020 16:24:16 +0000 (17:24 +0100)]
JAL-3673 make sure font metrics are updated if dealing with reference sequence font !

4 years agoJAL-3518 fix highlighting in Jalview for selections in ChimeraX
Jim Procter [Fri, 26 Jun 2020 16:21:55 +0000 (17:21 +0100)]
JAL-3518 fix highlighting in Jalview for selections in ChimeraX
- needed to thread off the subsequent POST back to ChimeraX so ChimeraX can first hangup its GET to Jalview’s Rest API

4 years agoJAL-3672 debug=false means no debug output
Jim Procter [Fri, 26 Jun 2020 16:17:38 +0000 (17:17 +0100)]
JAL-3672 debug=false means no debug output

4 years agoJAL-3672 more efficient when debug not enabled
Jim Procter [Fri, 26 Jun 2020 16:17:22 +0000 (17:17 +0100)]
JAL-3672 more efficient when debug not enabled

4 years agoJAL-3671 hardwire log4j.root logger to INFO to supress jetty and httpclient log output
Jim Procter [Fri, 26 Jun 2020 16:12:31 +0000 (17:12 +0100)]
JAL-3671 hardwire log4j.root logger to INFO to supress jetty and httpclient log output

4 years agoJAL-3518 tidy up asynchronous structure command execution
gmungoc [Fri, 26 Jun 2020 09:39:08 +0000 (10:39 +0100)]
JAL-3518 tidy up asynchronous structure command execution

4 years agoJAL-2010 unused prototype method removed
gmungoc [Thu, 25 Jun 2020 12:53:44 +0000 (13:53 +0100)]
JAL-2010 unused prototype method removed

4 years agoJAL-3518 pull up [get|list]ResidueAttributes to StructureCommandsI
gmungoc [Thu, 25 Jun 2020 11:50:47 +0000 (12:50 +0100)]
JAL-3518 pull up [get|list]ResidueAttributes to StructureCommandsI

4 years agoJAL-3518 separation of ChimeraXManager, pull up of closeViewer etc
gmungoc [Tue, 23 Jun 2020 15:55:42 +0000 (16:55 +0100)]
JAL-3518 separation of ChimeraXManager, pull up of closeViewer etc