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2016-09-13	gmungoc	JAL-1803 tests added for PDBEntry.Type	commit \| commitdiff \| tree
2016-09-13	gmungoc	JAL-1803 extracted class ChainId to jalview.util.CaseInsensi...	commit \| commitdiff \| tree
2016-09-13	gmungoc	JAL-2119 use File.separator not "/"	commit \| commitdiff \| tree
2016-09-12	gmungoc	JAL-2119 case-sensitive href filename checking	commit \| commitdiff \| tree
2016-09-12	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-09-07	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-09-07	gmungoc	JAL-2164 fix failing test	commit \| commitdiff \| tree
2016-09-06	gmungoc	JAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandidate()	commit \| commitdiff \| tree
2016-09-06	gmungoc	JAL-2147 additional test coverage for findMappingsForSequenc...	commit \| commitdiff \| tree
2016-09-05	gmungoc	JAL-2154 made Java 7 compatible	commit \| commitdiff \| tree
2016-09-05	gmungoc	JAL-2106 increased coverage for testGetPrimaryDbRefs	commit \| commitdiff \| tree
2016-09-05	gmungoc	JAL-2106 corrections to DBRefEntry.isPrimary code and...	commit \| commitdiff \| tree
2016-09-02	gmungoc	JAL-1854 distinct messages for TODO/FIXME and DOCUMENT ME	commit \| commitdiff \| tree
2016-09-01	gmungoc	JAL-2077 don't mess with the look and feel	commit \| commitdiff \| tree
2016-09-01	gmungoc	JAL-2077 less drastic exit on close	commit \| commitdiff \| tree
2016-09-01	gmungoc	JAL-2077 test harness for inspecting mouse events	commit \| commitdiff \| tree
2016-09-01	gmungoc	JAL-2077 check isPopupTrigger in mouseReleased not...	commit \| commitdiff \| tree
2016-09-01	gmungoc	JAL-1421 add generics to NJTree, refactor recursive...	commit \| commitdiff \| tree
2016-09-01	gmungoc	JAL-1854 rule to disallow import of swing in appletgui	commit \| commitdiff \| tree
2016-09-01	gmungoc	JAL-2077 do nothing in mousePressed if right button...	commit \| commitdiff \| tree
2016-09-01	gmungoc	JAL-2077 force defer right-click handling to mouseReleased...	commit \| commitdiff \| tree
2016-08-31	gmungoc	JAL-2077 test isPopupTrigger in mouseReleased or mouseClicke...	commit \| commitdiff \| tree
2016-08-31	gmungoc	JAL-2077 more javadoc	commit \| commitdiff \| tree
2016-08-31	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-08-31	gmungoc	JAL-2077 check for isPopupTrigger() in mousePressed...	commit \| commitdiff \| tree
2016-08-31	gmungoc	JAL-1670 repositioned feature for backwards compatibility...	commit \| commitdiff \| tree
2016-08-30	gmungoc	JAL-2183 defensive check for openFrameCount < 0 (shouldn...	commit \| commitdiff \| tree
2016-08-30	gmungoc	JAL-2183 simplified database tree actionPerformed,...	commit \| commitdiff \| tree
2016-08-30	gmungoc	JAL-2183 revised change (= no change)	commit \| commitdiff \| tree
2016-08-30	gmungoc	JAL-2183 formatter added @Override (only)	commit \| commitdiff \| tree
2016-08-30	gmungoc	JAL-2183 removed redundant (overriden) add panel to...	commit \| commitdiff \| tree
2016-08-29	gmungoc	JAL-1854 tweaks to rules and README	commit \| commitdiff \| tree
2016-08-29	gmungoc	JAL-1854 checkstyle relocated to /utils, newlines to...	commit \| commitdiff \| tree
2016-08-29	gmungoc	Merge branch 'bug/JAL-1841rnaSecStr' into develop	commit \| commitdiff \| tree
2016-08-29	gmungoc	JAL-1448 updated unit test for last change	commit \| commitdiff \| tree
2016-08-29	gmungoc	JAL-1841 robustness fix	commit \| commitdiff \| tree
2016-08-29	gmungoc	Merge branch 'develop' into bug/JAL-1841rnaSecStr	commit \| commitdiff \| tree
2016-08-26	gmungoc	JAL-1854 two more rules, readme notes	commit \| commitdiff \| tree
2016-08-26	gmungoc	Merge branch 'develop' into bug/JAL-1841rnaSecStr	commit \| commitdiff \| tree
2016-08-26	gmungoc	JAL-1854 commented FallThrough rule	commit \| commitdiff \| tree
2016-08-26	gmungoc	JAL-1854 corrected nested package rule	commit \| commitdiff \| tree
2016-08-26	gmungoc	JAL-2049 set Ensembl variant source to ENSEMBL if ...	commit \| commitdiff \| tree
2016-08-26	gmungoc	JAL-1854 comment switch case fallthrough	commit \| commitdiff \| tree
2016-08-25	gmungoc	JAL-1854 missing case break statements added	commit \| commitdiff \| tree
2016-08-25	gmungoc	JAL-1854 initial checkstyle config	commit \| commitdiff \| tree
2016-08-25	gmungoc	JAL-2178 remove duplicate Uniprot db source	commit \| commitdiff \| tree
2016-08-25	gmungoc	JAL-1424 duplicate key removed	commit \| commitdiff \| tree
2016-08-24	gmungoc	JAL-1355 correct 'thereshold' to 'threshold' in message...	commit \| commitdiff \| tree
2016-08-24	gmungoc	JAL-1424 removed unused and duplicated message keys	commit \| commitdiff \| tree
2016-08-24	gmungoc	JAL-1424 tidy / recode MessageManager calls to support...	commit \| commitdiff \| tree
2016-08-24	gmungoc	JAL-1854 removed pointless method override	commit \| commitdiff \| tree
2016-08-24	gmungoc	JAL-1424 removed two redundant (overwritten) setText...	commit \| commitdiff \| tree
2016-08-24	gmungoc	JAL-1424 corrected Message bundle lookup key	commit \| commitdiff \| tree
2016-08-24	gmungoc	JAL-1424 undo i18n of exception message	commit \| commitdiff \| tree
2016-08-24	gmungoc	JAL-1854 declare immutable class as final	commit \| commitdiff \| tree
2016-08-24	gmungoc	JAL-1424 recode calls to MessageManager to allow code...	commit \| commitdiff \| tree
2016-08-24	gmungoc	JAL-2151 port fix to applet	commit \| commitdiff \| tree
2016-08-24	gmungoc	JAL-1424 enhanced for cleaner reporting, checks calls...	commit \| commitdiff \| tree
2016-08-24	gmungoc	JAL-1424 also report (obsolete) keys in translated...	commit \| commitdiff \| tree
2016-08-23	gmungoc	JAL-2176 unused field / methods removed	commit \| commitdiff \| tree
2016-08-23	gmungoc	JAL-2174 markColumns() refactored inside ColumnSelection	commit \| commitdiff \| tree
2016-08-22	gmungoc	JAL-1448 corrected for backwards compatibility for...	commit \| commitdiff \| tree
2016-08-22	gmungoc	JAL-2175 code tidying	commit \| commitdiff \| tree
2016-08-22	gmungoc	JAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip	commit \| commitdiff \| tree
2016-08-22	gmungoc	JAL-2011 adjust method to fix failing unit test	commit \| commitdiff \| tree
2016-08-19	gmungoc	JAL-2174 bug fixes + refactoring to allow + unit tests	commit \| commitdiff \| tree
2016-08-18	gmungoc	Merge branch 'develop' into bug/JAL-1841rnaSecStr	commit \| commitdiff \| tree
2016-08-18	gmungoc	JAL-2077 using Platform method to check for Ctrl-down	commit \| commitdiff \| tree
2016-08-18	gmungoc	JAL-1445 status message '...not containing...' for...	commit \| commitdiff \| tree
2016-08-18	gmungoc	JAL-1693 show warning dialog if unable to make CDS...	commit \| commitdiff \| tree
2016-08-18	gmungoc	JAL-1855 fail gracefully if XML has no <sequence> element	commit \| commitdiff \| tree
2016-08-18	gmungoc	JAL-2077 handling Cmd-click in scale panel for Mac...	commit \| commitdiff \| tree
2016-08-18	gmungoc	JAL-2001 return copy of selection in getSelected()	commit \| commitdiff \| tree
2016-08-17	gmungoc	JAL-2146 status message now with formatted residue...	commit \| commitdiff \| tree
2016-08-17	gmungoc	JAL-2173 don't remove annotation from hidden columns	commit \| commitdiff \| tree
2016-08-17	gmungoc	JAL-2172 reverted to not sorting column selection	commit \| commitdiff \| tree
2016-08-17	gmungoc	JAL-2105 rest versions updated to 4.6, change log link...	commit \| commitdiff \| tree
2016-08-17	gmungoc	JAL-2172 handle case where column selection is not...	commit \| commitdiff \| tree
2016-08-16	gmungoc	Merge branch 'develop' into bug/JAL-1841rnaSecStr	commit \| commitdiff \| tree
2016-08-16	gmungoc	JAL-2172 unit test added	commit \| commitdiff \| tree
2016-08-16	gmungoc	JAL-2171 matching bracket default character for rna...	commit \| commitdiff \| tree
2016-08-16	gmungoc	Merge branch 'develop' into bug/JAL-1841rnaSecStr	commit \| commitdiff \| tree
2016-08-15	gmungoc	JAL-1841 better i18n text	commit \| commitdiff \| tree
2016-08-12	gmungoc	JAL-1841 count (logo height) is valid pairs only; detect...	commit \| commitdiff \| tree
2016-08-12	gmungoc	JAL-1841 bug fixes / code tidy for rna SS rendering...	commit \| commitdiff \| tree
2016-08-12	gmungoc	JAL-1841, bug fix in rna SS consensus, additions to...	commit \| commitdiff \| tree
2016-08-12	gmungoc	JAL-2171 default SS symbol to existing (if present)	commit \| commitdiff \| tree
2016-08-10	gmungoc	JAL-2124 i18n of 'All' menu item	commit \| commitdiff \| tree
2016-08-10	gmungoc	JAL-2124 i18n of "All" menu item	commit \| commitdiff \| tree
2016-08-10	gmungoc	JAL-2146 small optimisation (avoid String creation)	commit \| commitdiff \| tree
2016-08-10	gmungoc	JAL-2146 show Column no [Sequence no [Residue / pos...	commit \| commitdiff \| tree
2016-08-08	gmungoc	JAL-1577 rebuild menus when secondary structure manually...	commit \| commitdiff \| tree
2016-08-08	gmungoc	JAL-2119 replaced link with a non-404 alternative	commit \| commitdiff \| tree
2016-08-08	gmungoc	JAL-2168 -nonews option also mentioned here	commit \| commitdiff \| tree
2016-08-08	gmungoc	JAL-2119 updates to invalid / obsolete help links	commit \| commitdiff \| tree
2016-08-08	gmungoc	JAL-2168 document '-nonews' parameter	commit \| commitdiff \| tree
2016-08-05	gmungoc	JAL-2168 skip news feed if parameter "-nonews" is supplied	commit \| commitdiff \| tree
2016-08-05	gmungoc	JAL-1448 always use UK locale for formatted date properties	commit \| commitdiff \| tree
2016-08-05	gmungoc	JAL-2164 add transferred annotation to sequence	commit \| commitdiff \| tree
2016-08-04	gmungoc	JAL-2164 changed to be Java 1.7 compliant	commit \| commitdiff \| tree
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