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2023-02-13	Ben Soares	Merge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL...	commit \| commitdiff \| tree
2023-02-13	Ben Soares	JAL-4125 Move confirmation of closing external viewer...	commit \| commitdiff \| tree
2023-02-09	Ben Soares	JAL-4125 Additions to JvOptionPane and QuitHandler...	commit \| commitdiff \| tree
2023-01-30	Ben Soares	JAL-1988 Make sensible choices if only the opening...	commit \| commitdiff \| tree
2023-01-26	Ben Soares	JAL-4118 remove unnecessary sleep from QuitHandlerTest	commit \| commitdiff \| tree
2023-01-26	Ben Soares	JAL-4118 fix a small buglet in BackupFiles exhibited...	commit \| commitdiff \| tree
2023-01-26	Ben Soares	JAL-1988 Add a sleep to file save test to give time...	commit \| commitdiff \| tree
2023-01-17	Ben Soares	JAL-3416 No longer needed	commit \| commitdiff \| tree
2023-01-17	Ben Soares	Merge branch 'develop' into merge/JAL-1988_JAL-3772...	commit \| commitdiff \| tree
2023-01-16	Ben Soares	JAL-3416 More tweaking of FlatLaf. Problem with macOS...	commit \| commitdiff \| tree
2023-01-11	Ben Soares	JAL-1988 JAL-3772 Mark the _default_ STARTUP_FILE as...	commit \| commitdiff \| tree
2023-01-06	Ben Soares	JAL-3416 More explicit setting of FlatLaf macOS theme	commit \| commitdiff \| tree
2023-01-06	Ben Soares	JAL-3416 Upgraded FlatLaf to 3.0 and added macOS theme...	commit \| commitdiff \| tree
2023-01-06	Ben Soares	JAL-3416 remove a missed panel titlebar icon in TreePanel	commit \| commitdiff \| tree
2023-01-06	Ben Soares	JAL-3416 Fix file permissions on bundled macOS JREs	commit \| commitdiff \| tree
2022-11-30	Ben Soares	JAL-4101 Updated Rfam* tests	commit \| commitdiff \| tree
2022-11-30	Ben Soares	JAL-4101 Updated DEFAULT_RFAM_BASEURL	commit \| commitdiff \| tree
2022-11-29	Ben Soares	JAL-4101 Updated Rfam* tests	commit \| commitdiff \| tree
2022-11-29	Ben Soares	JAL-4101 Updated DEFAULT_RFAM_BASEURL	commit \| commitdiff \| tree
2022-11-17	Ben Soares	JAL-4019 Clarification of position on 'X' in help text	commit \| commitdiff \| tree
2022-11-16	Ben Soares	Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG_MODE...	commit \| commitdiff \| tree
2022-11-16	Ben Soares	JAL-3416 make flatlaf default for linux	commit \| commitdiff \| tree
2022-11-16	Ben Soares	JAL-4019 finalised a boolean option and tidied some...	commit \| commitdiff \| tree
2022-11-14	Ben Soares	JAL-4019 Put original test back	commit \| commitdiff \| tree
2022-11-14	Ben Soares	JAL-4019 Make diagnostic message debug level	commit \| commitdiff \| tree
2022-11-13	Ben Soares	JAL-4019 small colour fix for X in the documentation	commit \| commitdiff \| tree
2022-11-13	Ben Soares	JAL-4019 attribution to Suzanne	commit \| commitdiff \| tree
2022-11-13	Ben Soares	JAL-4019 Help pages for Nucleotide Ambiguity colour...	commit \| commitdiff \| tree
2022-11-13	Ben Soares	JAL-4019 small but important corrections to array order...	commit \| commitdiff \| tree
2022-11-13	Ben Soares	JAL-4019 Added tests for new Nucleotide sequence detection	commit \| commitdiff \| tree
2022-11-13	Ben Soares	JAL-4019 improvement to short sequence nucleotide detection...	commit \| commitdiff \| tree
2022-11-10	Ben Soares	JAL-4019 Nucleotide Ambiguity Colour Scheme added....	commit \| commitdiff \| tree
2022-11-09	Ben Soares	JAL-3416 Add necessary logo to non-internal Frames	commit \| commitdiff \| tree
2022-11-09	Ben Soares	Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG_MODE...	commit \| commitdiff \| tree
2022-11-09	Ben Soares	JAL-3416 Add necessary logo to non-internal Frames	commit \| commitdiff \| tree
2022-11-09	Ben Soares	Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG_MODE...	commit \| commitdiff \| tree
2022-11-09	Ben Soares	JAL-3416 Remove all JFrame/JInternalFrame icons (set...	commit \| commitdiff \| tree
2022-11-09	Ben Soares	Merge branch 'bug/JAL-1988_JAL-3772_improved_quit_handling...	commit \| commitdiff \| tree
2022-11-09	Ben Soares	JAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving...	commit \| commitdiff \| tree
2022-11-08	Ben Soares	Merge branch 'bug/JAL-1988_JAL-3772_improved_quit_handling...	commit \| commitdiff \| tree
2022-11-08	Ben Soares	JAL-1988 JAL-3776 Formatting JvOptionPane	commit \| commitdiff \| tree
2022-11-08	Ben Soares	JAL-1988 JAL-3772 Tests for various quitting scenarios	commit \| commitdiff \| tree
2022-11-08	Ben Soares	JAL-1988 JAL-3772 Fixes highlighted by tests	commit \| commitdiff \| tree
2022-11-04	Ben Soares	Merge branch 'merge/JAL-4054+JAL-4064' into ben-big...	commit \| commitdiff \| tree
2022-11-04	Ben Soares	JAL-3416 Added logoIcon to quit (and potentially other...	commit \| commitdiff \| tree
2022-11-04	Ben Soares	JAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...	commit \| commitdiff \| tree
2022-11-04	Ben Soares	JAL-4064 JAL-4054 Combined install4j10 template with...	commit \| commitdiff \| tree
2022-11-04	Ben Soares	JAL-4054 Altered file association templates and generated...	commit \| commitdiff \| tree
2022-11-03	Ben Soares	JAL-3416 File Chooser iconified, JvOptionPanes iconified...	commit \| commitdiff \| tree
2022-11-03	Ben Soares	JAL-1988 JAL-3772 Allow other window closing dialogs...	commit \| commitdiff \| tree
2022-11-03	Ben Soares	JAL-3416 More JInternalFrame icons	commit \| commitdiff \| tree
2022-11-03	Ben Soares	JAL-1988 JAL-3772 Tidying of unspecified Callable declaratio...	commit \| commitdiff \| tree
2022-11-03	Ben Soares	JAL-3416 Start to add JInternalFrame icons (to replace...	commit \| commitdiff \| tree
2022-11-02	Ben Soares	JAL-1988 JAL-3772 Moving packages to somewhere more...	commit \| commitdiff \| tree
2022-11-01	Ben Soares	JAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE	commit \| commitdiff \| tree
2022-11-01	Ben Soares	JAL-1988 JAL-3772 Change default alignmentviewport...	commit \| commitdiff \| tree
2022-11-01	Ben Soares	JAL-4064 tidying build.gradle	commit \| commitdiff \| tree
2022-11-01	Ben Soares	JAL-4064 re-added bundled macOS JREs as Filesets, which...	commit \| commitdiff \| tree
2022-11-01	Ben Soares	JAL-4064 Cleaned up file sets in install4j template...	commit \| commitdiff \| tree
2022-11-01	Ben Soares	JAL-4064 Download JRE/JDKs from Azul if not os/arch...	commit \| commitdiff \| tree
2022-10-29	Ben Soares	JAL-1988 JAL-3772 removed a debugging log line	commit \| commitdiff \| tree
2022-10-28	Ben Soares	JAL-1988 JAL-3772 Removed 'Wait' button from waitDialog...	commit \| commitdiff \| tree
2022-10-28	Ben Soares	JAL-1988 JAL-3772 Fixed wait between waitDialog appearances...	commit \| commitdiff \| tree
2022-10-27	Ben Soares	JAL-1988 Allow generic Container object in JvOptionPane...	commit \| commitdiff \| tree
2022-10-27	Ben Soares	Merge branch 'develop' into bug/JAL-1988_JAL-3772_improved_q...	commit \| commitdiff \| tree
2022-10-27	Ben Soares	JAL-4083 don't need globalUseScriptWait after all,...	commit \| commitdiff \| tree
2022-10-27	Ben Soares	JAL-4083 only set globalUseScriptWait if needed	commit \| commitdiff \| tree
2022-10-27	Ben Soares	JAL-4083 Use jmolViewer.scriptWait instead of jmolViewer...	commit \| commitdiff \| tree
2022-10-26	Ben Soares	Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...	commit \| commitdiff \| tree
2022-10-26	Ben Soares	JAL-3416 (and others) increasing number of STDERR lines...	commit \| commitdiff \| tree
2022-10-25	Ben Soares	JAL-3772 silly NPE error fixed	commit \| commitdiff \| tree
2022-10-25	Ben Soares	JAL-3416 Making FlatLaF default for macs due to a problem...	commit \| commitdiff \| tree
2022-10-24	Ben Soares	JAL-1988 JAL-3772 wait timer working first time but...	commit \| commitdiff \| tree
2022-10-24	Ben Soares	JAL-1988 JAL-3772 Non-blocking modal dialogs for unsaved...	commit \| commitdiff \| tree
2022-10-11	Ben Soares	JAL-4014 Changed gecos display names to match labels...	commit \| commitdiff \| tree
2022-09-29	Ben Soares	Merge branch 'develop' into bug/JAL-1988_JAL-3772_improved_q...	commit \| commitdiff \| tree
2022-09-26	Ben Soares	JAL-1988 JAL-3772 linked undostack to saved changes...	commit \| commitdiff \| tree
2022-09-26	Ben Soares	JAL-1988 better wording for quit dialog	commit \| commitdiff \| tree
2022-09-23	Ben Soares	JAL-1988 JAL-3772 Quit confirmation dialog boxes with...	commit \| commitdiff \| tree
2022-09-23	Ben Soares	JAL-3676 extra information about jalview_properties...	commit \| commitdiff \| tree
2022-09-23	Ben Soares	JAL-1988 property based fake delay whilst saving project...	commit \| commitdiff \| tree
2022-09-02	Ben Soares	JAL-1988 Added a saves in progress check for quit	commit \| commitdiff \| tree
2022-08-31	Ben Soares	JAL-1988 added a saveInProgress stack to BackupFiles	commit \| commitdiff \| tree
2022-08-23	Ben Soares	JAL-4014 JAL-4063 Added gecos colourScheme names (INFO...	commit \| commitdiff \| tree
2022-08-01	Ben Soares	JAL-4056 fixed tl;dr section of doc/building.md	commit \| commitdiff \| tree
2022-07-26	Ben Soares	JAL-4036 Fixed the virus_host_id query field	commit \| commitdiff \| tree
2022-07-26	Ben Soares	JAL-4036 Added text to help about different number...	commit \| commitdiff \| tree
2022-07-25	Ben Soares	JAL-4036 updated help about new UniProt API	commit \| commitdiff \| tree
2022-07-25	Ben Soares	JAL-4036 moved a comment block	commit \| commitdiff \| tree
2022-07-25	Ben Soares	JAL-4034 button looks better also on other OSes with...	commit \| commitdiff \| tree
2022-07-24	Ben Soares	JAL-4034 add round corners to 3DB confirmation button...	commit \| commitdiff \| tree
2022-07-22	Ben Soares	JAL-4036 Changes made from code review CR-JAL-265	commit \| commitdiff \| tree
2022-07-22	Ben Soares	JAL-4036 Add getDbName to the GFTSPanelI and add an...	commit \| commitdiff \| tree
2022-07-22	Ben Soares	JAL-4036 removing the query field code from the dropdown...	commit \| commitdiff \| tree
2022-07-21	Ben Soares	JAL-4036 Don't autosearch changing index when autosearch...	commit \| commitdiff \| tree
2022-07-21	Ben Soares	JAL-4036 add search fieldname to dropdown list	commit \| commitdiff \| tree
2022-07-21	Ben Soares	JAL-4036 removed often duplicated pluralisation in...	commit \| commitdiff \| tree
2022-07-21	Ben Soares	JAL-4036 New configuration, target and pagination process...	commit \| commitdiff \| tree
2022-07-15	Ben Soares	JAL-4034 Use the new non-modal JDialog for 3DBeacons...	commit \| commitdiff \| tree
2022-07-15	Ben Soares	JAL-4034 Allow request for non-modal JDialog, which...	commit \| commitdiff \| tree
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