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2019-08-09	gmungoc	JAL-3187 removal of variant feature (non-virtual) transfer...	commit \| commitdiff \| tree
2019-08-07	gmungoc	JAL-3187 (fudge) look in both alignments for stored...	commit \| commitdiff \| tree
2019-08-07	gmungoc	Merge branch 'develop' into feature/JAL-3187linkedFeatures	commit \| commitdiff \| tree
2019-07-31	gmungoc	JAL-3389 add .py to restored Chimera session filename...	commit \| commitdiff \| tree
2019-07-31	gmungoc	Merge branch 'bug/JAL-3388structureChooserSorting'...	commit \| commitdiff \| tree
2019-07-30	gmungoc	JAL-3198 more efficient Sequence.getDisplayId()	commit \| commitdiff \| tree
2019-07-30	gmungoc	JAL-3388 correct class for column 0 Ref Sequence	commit \| commitdiff \| tree
2019-07-29	gmungoc	JAL-3386 correct wrapped width calculation for headless...	commit \| commitdiff \| tree
2019-07-29	gmungoc	JAL-3377 more reused of SeqCanvas.computeWrappedGeometry	commit \| commitdiff \| tree
2019-07-29	gmungoc	JAL-3377 add seq-annotations gap to cheight not to...	commit \| commitdiff \| tree
2019-07-29	gmungoc	JAL-3377 Javadoc added for getWrappedHeight()	commit \| commitdiff \| tree
2019-07-29	gmungoc	JAL-3377 corrected wrapped widths height for IdCanvas	commit \| commitdiff \| tree
2019-07-29	gmungoc	JAL-3377 include seq-annotation spacing in getWrappedHeight()	commit \| commitdiff \| tree
2019-07-26	gmungoc	Merge branch 'features/JAL-3375vcfValidation' into	commit \| commitdiff \| tree
2019-07-26	gmungoc	JAL-1793 only decode specific special characters in...	commit \| commitdiff \| tree
2019-07-26	gmungoc	JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...	commit \| commitdiff \| tree
2019-07-26	gmungoc	JAL-3375 format validate VCF Integer and Float fields	commit \| commitdiff \| tree
2019-07-25	gmungoc	JAL-3375 ignore '.' values for VCF data	commit \| commitdiff \| tree
2019-07-16	gmungoc	Merge branch 'develop' into feature/JAL-3187linkedFeatures	commit \| commitdiff \| tree
2019-07-16	gmungoc	JAL-2987 tolerate null double values when formatting...	commit \| commitdiff \| tree
2019-07-10	gmungoc	Merge branch 'develop' into feature/JAL-3187linkedFeatures	commit \| commitdiff \| tree
2019-07-08	gmungoc	JAL-3187 derived peptide variants tweaks and tests	commit \| commitdiff \| tree
2019-07-05	gmungoc	JAL-3187 initial refactoring towards peptide variant...	commit \| commitdiff \| tree
2019-07-05	gmungoc	JAL-1793 apply URL decoding when saving VCF attribute...	commit \| commitdiff \| tree
2019-07-04	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2019-07-04	gmungoc	JAL-3111 help pages minor corrections	commit \| commitdiff \| tree
2019-06-18	gmungoc	JAL-3313 don't double count mapped codons	commit \| commitdiff \| tree
2019-06-18	gmungoc	JAL-3187 javadoc	commit \| commitdiff \| tree
2019-06-18	gmungoc	JAL-3304 option to export linked features also for...	commit \| commitdiff \| tree
2019-06-18	gmungoc	JAL-3304 option to export linked features in Jalview...	commit \| commitdiff \| tree
2019-06-18	gmungoc	JAL-3187 i18n show linked features checkboxes	commit \| commitdiff \| tree
2019-06-18	gmungoc	JAL-3305 mirror popup menu column selections in split...	commit \| commitdiff \| tree
2019-06-17	gmungoc	JAL-2792 JAL-3187 linked features (if shown) in Feature...	commit \| commitdiff \| tree
2019-06-17	gmungoc	JAL-3187 update alignAs code and unit tests for 'shared...	commit \| commitdiff \| tree
2019-06-17	gmungoc	JAL-3187 update unit test - protein variants not now...	commit \| commitdiff \| tree
2019-06-17	gmungoc	JAL-3187 add sequence to feature details table (and...	commit \| commitdiff \| tree
2019-06-14	gmungoc	JAL-3302 transfer visible 'linked' features to Chimera	commit \| commitdiff \| tree
2019-06-13	gmungoc	JAL-3303 ignore deletions when computing peptide variants	commit \| commitdiff \| tree
2019-06-13	gmungoc	JAL-3143 recognise lnc_RNA as transcript	commit \| commitdiff \| tree
2019-06-11	gmungoc	Merge branch 'develop' into feature/JAL-3187linkedFeatures	commit \| commitdiff \| tree
2019-06-11	gmungoc	JAL-3143 also parse "phase" from JSON response if present	commit \| commitdiff \| tree
2019-06-11	gmungoc	Merge branch 'develop' into feature/JAL-3187linkedFeatures	commit \| commitdiff \| tree
2019-06-11	gmungoc	JAL-3111 update release date placeholder	commit \| commitdiff \| tree
2019-06-11	gmungoc	JAL-3288 fixes for gain/lose focus	commit \| commitdiff \| tree
2019-06-11	gmungoc	JAL-3187 CDS has same dataset sequence as transcript	commit \| commitdiff \| tree
2019-06-07	gmungoc	JAL-3187 save and restore flags for show complement...	commit \| commitdiff \| tree
2019-06-07	gmungoc	JAL-3187 change fields to local variables	commit \| commitdiff \| tree
2019-06-07	gmungoc	Merge branch 'develop' into feature/JAL-3187linkedFeatures	commit \| commitdiff \| tree
2019-06-07	gmungoc	Merge branch 'bug/JAL-3288splitFrameMenusJava11' into...	commit \| commitdiff \| tree
2019-06-07	gmungoc	JAL-3187 Viewport schema attributes for showComplementFeatur...	commit \| commitdiff \| tree
2019-06-07	gmungoc	JAL-3251 added optional attributes Sequence.biotype...	commit \| commitdiff \| tree
2019-06-07	gmungoc	JAL-2738 use GeneLocus extends DBRefEntry to hold chromosoma...	commit \| commitdiff \| tree
2019-06-06	gmungoc	Merge branch 'bug/JAL-3288splitFrameMenusJava11' into...	commit \| commitdiff \| tree
2019-06-06	gmungoc	JAL-3187 deletions (of Castor code) after merge from...	commit \| commitdiff \| tree
2019-06-06	gmungoc	Merge branch 'develop' into trialMerge	commit \| commitdiff \| tree
2019-06-06	gmungoc	JAL-3187 commit to enable merge from develop	commit \| commitdiff \| tree
2019-06-05	gmungoc	JAL-3288 override JInternalFrame.setSelected() to avoid...	commit \| commitdiff \| tree
2019-06-04	gmungoc	JAL-2386 avoid duplicate pdbids in free text query	commit \| commitdiff \| tree
2019-05-29	gmungoc	JAL-2738 error logging if no ##reference found	commit \| commitdiff \| tree
2019-05-29	gmungoc	JAL-2738 accept .csi, default to GRCh37:homo_sapiens...	commit \| commitdiff \| tree
2019-05-27	gmungoc	JAL-3141 test file in test folder not examples	commit \| commitdiff \| tree
2019-05-24	gmungoc	JAL-1988 Spanish typo corrección	commit \| commitdiff \| tree
2019-05-22	gmungoc	JAL-3111 help file spelling correction	commit \| commitdiff \| tree
2019-05-21	gmungoc	JAL-3273 small correction to expected result calculation	commit \| commitdiff \| tree
2019-05-06	gmungoc	JAL-3240 known issue for release notes	commit \| commitdiff \| tree
2019-05-06	gmungoc	JAL-3239 release note	commit \| commitdiff \| tree
2019-05-06	gmungoc	JAL-3244 release note	commit \| commitdiff \| tree
2019-05-06	gmungoc	Merge remote-tracking branch 'origin/bug/JAL-3239monospacedE...	commit \| commitdiff \| tree
2019-05-06	gmungoc	JAL-3244 delete obsolete method	commit \| commitdiff \| tree
2019-05-02	gmungoc	JAL-3239 draw EPS or SVG one character at a time (even...	commit \| commitdiff \| tree
2019-05-02	gmungoc	Merge branch 'bug/JAL-3244jmolWindows' into develop	commit \| commitdiff \| tree
2019-05-02	gmungoc	JAL-3244 renamed Platform method for clarity	commit \| commitdiff \| tree
2019-05-01	gmungoc	JAL-3244 ignore file path separator when comparing...	commit \| commitdiff \| tree
2019-04-30	gmungoc	JAL-3241 simplified enum constructors for classloadability...	commit \| commitdiff \| tree
2019-04-29	gmungoc	JAL-2738 JAL-2743 update unit test to match new VCF...	commit \| commitdiff \| tree
2019-04-29	gmungoc	JAL-3003 help page mention EPS doesn't support transparency	commit \| commitdiff \| tree
2019-04-26	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2019-04-26	gmungoc	JAL-2743 class Javadoc	commit \| commitdiff \| tree
2019-04-26	gmungoc	JAL-2738 JAL-2743 properties to map VCF header to species...	commit \| commitdiff \| tree
2019-04-26	gmungoc	JAL-3010 borderless 'x' for "delete this filter condition"	commit \| commitdiff \| tree
2019-04-26	gmungoc	JAL-2808 better tooltip 'delete this condition'	commit \| commitdiff \| tree
2019-04-20	gmungoc	JAL-2791 tailored message if find fails on selection...	commit \| commitdiff \| tree
2019-04-18	gmungoc	JAL-1793 basic help text for VCF option	commit \| commitdiff \| tree
2019-04-18	gmungoc	JAL-3111 additional release notes	commit \| commitdiff \| tree
2019-04-18	gmungoc	JAL-3111 small simplification of table tags, valign top	commit \| commitdiff \| tree
2019-04-18	gmungoc	JAL-3111 release notes first pass complete	commit \| commitdiff \| tree
2019-04-18	gmungoc	JAL-2620 updated help page to mention alternative genetic...	commit \| commitdiff \| tree
2019-04-18	gmungoc	JAL-3193 dbSource always "ENSEMBL"	commit \| commitdiff \| tree
2019-04-16	gmungoc	Merge branch 'bug/JAL-3218scalePanelPopups' into develop	commit \| commitdiff \| tree
2019-04-15	gmungoc	JAL-3193 no separatge EnsemblGenomes source in SequenceFetcher	commit \| commitdiff \| tree
2019-04-10	gmungoc	JAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org	commit \| commitdiff \| tree
2019-04-10	gmungoc	JAL-3018 REST version updated to 10.0	commit \| commitdiff \| tree
2019-04-03	gmungoc	JAL-3021 show Sequence Details with cursor at top	commit \| commitdiff \| tree
2019-04-02	gmungoc	JAL-3218 allow both Hide and Reveal in scale panel...	commit \| commitdiff \| tree
2019-03-29	gmungoc	JAL-3140 InstallAnywhere updated to intervalstore-v1...	commit \| commitdiff \| tree
2019-03-29	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2019-03-29	gmungoc	JAL-3140 intervalstore now v1.0 (public release)	commit \| commitdiff \| tree
2019-03-28	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2019-03-28	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2019-03-28	gmungoc	JAL-1889 patch for failing isControDown test on build...	commit \| commitdiff \| tree
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