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Merge branch 'merge/JAL-3140' into develop
2019-03-01 gmungocMerge branch 'merge/JAL-3140' into develop
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2019-03-01 gmungocJAL-3140 update for change to SequenceI api
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2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL...
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2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar
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2019-02-28 gmungocJAL-3140 confine intervalstore imports to jalview.datamodel...
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2019-02-28 gmungocMerge branch 'bug/JAL-2420revealAllMenu' into develop
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2019-02-28 gmungocMerge branch 'bug/JAL-3166npeAllRowsHidden' into develop
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2019-02-28 gmungocMerge branch 'feature/JAL-3169cancelOverwrite' into...
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2019-02-28 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into merge...
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2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_backup...
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2019-02-27 gmungocJAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
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2019-02-26 gmungocJAL-3201 group colour schemes distinct instances
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2019-02-25 gmungocJAL-3200 fast lookup of DSSP3 notation
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2019-02-24 gmungocJAL-3198 don't recalculate group conservation for Id...
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2019-02-24 gmungocJAL-3198 SequenceGroup 'bulk constructor' without duplicates...
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2019-02-22 gmungocJAL-2915 don't recalculate Overview on scroll to position...
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2019-02-22 gmungocJAL-2738 don't set AF as feature score
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2019-02-07 gmungocJAL-3140 updated to latest intervalstore.jar
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2019-02-04 gmungocJAL-3143 update unit test for ID -> id change
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2019-01-29 gmungocJAL-3143 format alleles array for feature description
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2019-01-24 gmungocJAL-3018 Ensembl version updated to 9.0
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2019-01-23 gmungocJAL-3063 correct handling of absent choice element...
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2019-01-18 gmungocJAL-3143 'id' not 'ID' attribute drives generation...
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2019-01-14 gmungocJAL-3186 remove Variable Colour from popup menu
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2019-01-14 gmungocJAL-3186 remove duplicate message keys
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2019-01-14 gmungocJAL-2069 wider dialog so all fields show!
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2019-01-14 gmungocJAL-2069 clear any error colour when setting threshold...
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2019-01-14 gmungocJAL-3125 tidy up
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2019-01-14 gmungocJAL-3125 avoid slider 'rounding' threshold field value
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2019-01-03 gmungocJAL-1889 additional test for clover-added fields
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2019-01-03 gmungocJAL-1889 ignore 'synthetic' fields added for jacoco
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2018-12-21 gmungocJAL-1767 minimise local variable scope
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2018-12-19 gmungocJAL-2791 JAL-2808 correct Javadoc for api method
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2018-12-19 gmungocJAL-3032 ignore /site also on non-JS branches
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2018-12-10 gmungocJAL-1421 added type to List and Vector
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2018-12-10 gmungocJAL-3169 leave file browser open on Cancel in overwrite...
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2018-12-06 gmungocJAL-1854 fix Checkstyle import violations
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2018-12-06 gmungocJAL-1854 Checkstyle updated to 8.12
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2018-12-03 gmungocJAL-3063 Castor removed from codebase
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2018-12-03 gmungocMerge branch 'feature/JAL-3063JAXB' into feature/JAL...
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2018-11-30 gmungocJAL-2420 don't offer Reveal All over alignment panel
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2018-11-30 gmungocJAL-3166 catch NPE if all sequences are hidden
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2018-11-29 gmungocJAL-3140 updated IntervalStore jar
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2018-11-29 gmungocJAL-3140 named tagged version of intervalstore.jar
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2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library
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2018-11-08 gmungocJAL-1889 ignore Clover instrumentation in test (second...
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2018-11-08 gmungocJAL-1889 unit test tweaks for running on server
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2018-10-25 gmungocJAL-3143 unit tests updated for code changes!
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2018-10-25 gmungocJAL-3143 comma-delimited feature attributes for alleles,
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2018-10-25 gmungocJAL-3143 fetch Ensembl(Genomes) features as JSON not GFF
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2018-09-28 gmungocJAL-3063 service param files read/saved using JAXB...
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2018-09-28 gmungocJAL-3063 top level element added to JalviewWsParamSet.xsd
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2018-09-28 gmungocJAL-3063 comments re use of xjc to generate Java binding...
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2018-09-24 gmungocJAL-3063 tidy commented out code
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2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional...
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2018-09-20 gmungocJAL-2843 tweaks to help text for filters
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2018-09-20 gmungocJAL-2843 help text for colour by attribute, feature...
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2018-09-19 gmungocJAL-3120 preserve plain colour value when changing...
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2018-09-19 gmungocMerge branch 'develop' of https://source.jalview.org...
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2018-09-19 gmungocJAL-2808 JAL-3032 drop tabbed layout for Colours and...
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2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load project...
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2018-09-19 gmungocJAL-3063 unit test for save/load project switched to...
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2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB
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2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB
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2018-09-18 gmungocJAL-3063 top level element added to colours schema...
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2018-09-18 gmungocJAL-3063 New View via JAXB
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2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load project...
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2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to...
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2018-09-18 gmungocJAL-3063 JAXB binding classes generated by xjc from...
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2018-09-18 gmungocJAL-3063 tweak schema so JAXB tool xjc recognises XML...
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2018-09-18 gmungocJAL-3063 tweak schema so JAXB generates enums for enumerated...
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2018-09-17 gmungocJAL-3116 test method renamed to match code
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2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB
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2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit...
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2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor
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2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
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2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
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2018-09-12 gmungocJAL-1551 reinstated Save actions
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2018-09-03 gmungocMerge branch 'trialMerge' into releases/Release_2_10_5_Branch
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2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
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2018-08-31 gmungocJAL-3003 remove redundant call to drawSelectionGroup
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2018-08-28 gmungocJAL-3059 use correct border colour for groups
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2018-08-28 gmungocJAL-3003 draw selection group outline on main graphics...
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2018-08-28 gmungocJAL-247 comment to clarify wrapped print algorithm
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2018-08-28 gmungocJAL-247 print/export wrapped uses common code to draw...
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2018-08-28 gmungocJAL-3087 include full alignment height in repeating...
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2018-08-28 gmungocJAL-247 draw/print sequence ids now uses common code...
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2018-08-15 gmungocJAL-3080 remove tree partition if no groups created
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2018-08-14 gmungocJAL-3078 reset Tree font (only!) on Cancel
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2018-08-10 gmungocJAL-3018 updated to Ensembl REST 7.0
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2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene...
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2018-08-10 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
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2018-06-07 gmungocJAL-2755 correct Javadoc and error handling
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2018-06-07 gmungocJAL-2920 format/comment tidy
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2018-06-07 gmungocJAL-2920 wrap description in <html/> if it includes...
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2018-06-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' of https...
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2018-06-06 gmungocJAL-2920 unit tests for 3 or more original or variant...
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2018-06-06 gmungocJAL-3013 ensure Chimera as a symlink gets resolved
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2018-06-04 gmungocJAL-2808 update test for revised treatment of 'mixed...
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2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList
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