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2019-05-27	Ben Soares	JAL-3141 Added HashMap types for Java 1.8 compatibility	commit \| commitdiff \| tree
2019-05-27	Ben Soares	Merge branch 'task/JAL-3141_Customise_checkbox' into...	commit \| commitdiff \| tree
2019-05-27	Ben Soares	JAL-3141 Object array cast missing	commit \| commitdiff \| tree
2019-05-27	Ben Soares	Merge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_merge...	commit \| commitdiff \| tree
2019-05-27	Ben Soares	Merge branch 'develop' into task/JAL-3247_JAL-3246_JAL...	commit \| commitdiff \| tree
2019-05-27	Ben Soares	JAL-3247 Added AppleScript based App to run old Jalview...	commit \| commitdiff \| tree
2019-05-27	Ben Soares	JAL-3141 Generified the JvUtils.buildComboWithTooltips...	commit \| commitdiff \| tree
2019-05-25	Ben Soares	JAL-3141 One more error log fix	commit \| commitdiff \| tree
2019-05-25	Ben Soares	JAL-3141 Added tooltips on Schemes dropdown and Customise...	commit \| commitdiff \| tree
2019-05-24	Ben Soares	JAL-3141 Fixes recommended from gmc's test	commit \| commitdiff \| tree
2019-05-24	Ben Soares	JAL-3141 Fixed vertical size of the example filenames...	commit \| commitdiff \| tree
2019-05-24	Ben Soares	JAL-3141 Fixed tests	commit \| commitdiff \| tree
2019-05-24	Ben Soares	JAL-3141 Reworked a lot of BackupFiles to allow the...	commit \| commitdiff \| tree
2019-05-22	Ben Soares	Merge branch 'bug/JAL-3141_backupfiles_prefs_widget_disable_...	commit \| commitdiff \| tree
2019-05-21	Ben Soares	JAL-3247 Launcher start improvements. RPM and DEB no...	commit \| commitdiff \| tree
2019-05-20	Ben Soares	Merge branch 'task/JAL-3254_improved_max_memory_stack_settin...	commit \| commitdiff \| tree
2019-05-20	Ben Soares	JAL-3247 Unix shell installer and tar archive corrected...	commit \| commitdiff \| tree
2019-05-20	Ben Soares	JAL-3254 Improved memory setting (allows mem for OS...	commit \| commitdiff \| tree
2019-05-13	Ben Soares	Merge branch 'task/JAL-3236_install4j_linux_unix_userland_in...	commit \| commitdiff \| tree
2019-05-13	Ben Soares	JAL-3247 nogradle option on this mac build/install...	commit \| commitdiff \| tree
2019-05-13	Ben Soares	JAL-3247 JAL-3254 JAL-3260 Fixed: JVL file jalview...	commit \| commitdiff \| tree
2019-05-10	Ben Soares	JAL-3246 JAL-3247 Reworked JVL files as getdown.txt...	commit \| commitdiff \| tree
2019-05-09	Ben Soares	JAL-3236 Added unixInstaller to install4jMediaTypes...	commit \| commitdiff \| tree
2019-05-09	Ben Soares	JAL-3247 JAL-3254 Ensure .jvp and .jvl appear first...	commit \| commitdiff \| tree
2019-05-09	Ben Soares	JAL-3247 JAL-3254 Fixed file association launch behaviour...	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3246 add -Pgetdown_local=true to use local files	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3247 JAL-3254 changing default location of jalview...	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3247 JAL-3254 Getdown now opening any files thrown...	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3247 JAL-3254 Automatically creating correct file...	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3247 JAL-3254 Automatically creating correct file...	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3247 Script to produce auto file association files...	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3247 Note in launcher.log when using a JVL file	commit \| commitdiff \| tree
2019-05-07	Ben Soares	JAL-3247 Changed JVL file to be a props file, with...	commit \| commitdiff \| tree
2019-05-07	Ben Soares	JAL-3247 Script to automatically install Jalview from...	commit \| commitdiff \| tree
2019-05-07	Ben Soares	JAL-3247 Auto generated file associations from jalview...	commit \| commitdiff \| tree
2019-05-06	Ben Soares	JAL-3247 Allowing 'file' protocol URL with empty domain...	commit \| commitdiff \| tree
2019-05-06	Ben Soares	JAL-3247 Code changes to getdown. Double click open...	commit \| commitdiff \| tree
2019-05-06	Ben Soares	JAL-3247 improvements	commit \| commitdiff \| tree
2019-05-06	Ben Soares	JAL-3247 Some getdown image file changes/tidying	commit \| commitdiff \| tree
2019-05-03	Ben Soares	JAL-3247 First attempt at getdown code to add macOS...	commit \| commitdiff \| tree
2019-05-03	Ben Soares	JAL-3247 Part way towards adding double-click opening...	commit \| commitdiff \| tree
2019-05-02	Ben Soares	JAL-3247 Improved file associations on macOS and Windows	commit \| commitdiff \| tree
2019-05-02	Ben Soares	adding another getdown file (produced during a getdown...	commit \| commitdiff \| tree
2019-05-02	Ben Soares	JAL-3247 jvp jvl File associations, JRE variablised...	commit \| commitdiff \| tree
2019-05-01	Ben Soares	Fixed -Djvl=true in install4j JVM invocation	commit \| commitdiff \| tree
2019-05-01	Ben Soares	Extra JVL file association in the installer. Shadowed...	commit \| commitdiff \| tree
2019-05-01	Ben Soares	Merge branch 'task/JAL-3243_PDB_free_text_error' into...	commit \| commitdiff \| tree
2019-04-30	Ben Soares	JAL-3243 Replaced javax.ws jar compatible with jersey...	commit \| commitdiff \| tree
2019-04-30	Ben Soares	JAL-3196 Correcting the source for getdown (already...	commit \| commitdiff \| tree
2019-04-26	Ben Soares	Added a unixInstaller and unixArchive media-type to...	commit \| commitdiff \| tree
2019-04-26	Ben Soares	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2019-04-26	Ben Soares	Removing old commented out 'org.gradle.java.home='...	commit \| commitdiff \| tree
2019-04-26	Ben Soares	Also removing eclipse .project and .settings from the...	commit \| commitdiff \| tree
2019-04-26	Ben Soares	Removing .classpath from this branch	commit \| commitdiff \| tree
2019-04-26	Ben Soares	JAL-3233 Added isAMac check for -Xdock:icon addition...	commit \| commitdiff \| tree
2019-04-25	Ben Soares	JAL-3224 JAL-3225 Fixed help image mangling, moved...	commit \| commitdiff \| tree
2019-04-25	Ben Soares	JAL-3224 JAL-3225 Some fixes in install4j template...	commit \| commitdiff \| tree
2019-04-25	Ben Soares	JAL-3224 JAL-3225 To be compatible with install4j bundled...	commit \| commitdiff \| tree
2019-04-25	Ben Soares	JAL-3224 JAL-3225 Added lines to check for updates...	commit \| commitdiff \| tree
2019-04-25	Ben Soares	JAL-3224 Tidied up Network installers in install4j...	commit \| commitdiff \| tree
2019-04-24	Ben Soares	JAL-3224 minor fix for build.gradle and gradle eclipse	commit \| commitdiff \| tree
2019-04-18	Ben Soares	JAL-3130 moved jar needed for getdown to libs (not...	commit \| commitdiff \| tree
2019-04-18	Ben Soares	JAL-3224 Removed JREs (these now need to be in ~/buildtools...	commit \| commitdiff \| tree
2019-04-17	Ben Soares	JAL-3224 Add commons-compress-1.18.jar	commit \| commitdiff \| tree
2019-04-17	Ben Soares	JAL-3224 Bundling appropriate Mac OS/Windows JRE as...	commit \| commitdiff \| tree
2019-04-17	Ben Soares	JAL-3224 New version of getdown which will cope with...	commit \| commitdiff \| tree
2019-04-16	Ben Soares	JAL-3130 moved resources/install4j to utils/install4j	commit \| commitdiff \| tree
2019-04-15	Ben Soares	JAL-3130 Somewhere in the old libs the Jws2 client...	commit \| commitdiff \| tree
2019-04-15	Ben Soares	JAL-3130 Helper classes to take Class Exceptions when...	commit \| commitdiff \| tree
2019-04-15	Ben Soares	JAL-3130 some clover fixes for helplinks. Use 'gradle...	commit \| commitdiff \| tree
2019-04-15	Ben Soares	JAL-3130 adapted getdown src. attempt 2. first attempt...	commit \| commitdiff \| tree
2019-04-05	Ben Soares	JAL-3130 adapted getdown src	commit \| commitdiff \| tree
2019-04-05	Ben Soares	JAL-3130 This commit concentrates on the Mac OS X DMG...	commit \| commitdiff \| tree
2019-04-04	Ben Soares	JAL-3130 trying to be Java 1.8 source compatible -...	commit \| commitdiff \| tree
2019-04-04	Ben Soares	JAL-3130 JAL-3007 more files needed for getdown launcher	commit \| commitdiff \| tree
2019-04-04	Ben Soares	JAL-3130 JAL-3007 improvements to gradle build	commit \| commitdiff \| tree
2019-04-01	Ben Soares	JAL-3130 JAL-3007 Added gradle build for Java 11. Now...	commit \| commitdiff \| tree
2019-04-01	Ben Soares	JAL-3130 JAL-3007 Added gradle build for Java 11 and...	commit \| commitdiff \| tree
2019-03-22	Ben Soares	JAL-3130 adding two more modules picked up by gradle...	commit \| commitdiff \| tree
2019-03-22	Ben Soares	JAL-3130 mark some deprecated methods in Regex as ...	commit \| commitdiff \| tree
2019-03-21	Ben Soares	JAL-3130 Replaced deprecated Class.newInstance() with...	commit \| commitdiff \| tree
2019-03-20	Ben Soares	JAL-3130 Lots of deprecation fixes. See utils/deprecation_a...	commit \| commitdiff \| tree
2019-03-20	Ben Soares	JAL-3141 Disabled the 'Include Backup Files' checkbox...	commit \| commitdiff \| tree
2019-03-19	Ben Soares	JAL-3141 Removed 'Save Project' File Menu item	commit \| commitdiff \| tree
2019-03-19	Ben Soares	JAL-3141 patch for Backups preferences enable/disable...	commit \| commitdiff \| tree
2019-03-19	Ben Soares	JAL-3130 remove some comments on quit. fix modules...	commit \| commitdiff \| tree
2019-03-19	Ben Soares	JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...	commit \| commitdiff \| tree
2019-03-18	Ben Soares	JAL-3130 removing no longer needed JRE (going to use...	commit \| commitdiff \| tree
2019-03-18	Ben Soares	JAL-3130 Removing accidentally committed tmp dir	commit \| commitdiff \| tree
2019-03-07	Ben Soares	JAL-3130 deprecation change preparation	commit \| commitdiff \| tree
2019-03-05	Ben Soares	JAL-3141 Fixed inconsistent (changed) message labels...	commit \| commitdiff \| tree
2019-02-22	Ben Soares	JAL-3141 improved message for asking whether to delete...	commit \| commitdiff \| tree
2019-02-21	Ben Soares	JAL-3141 Sensible refactoring for confirming deleting...	commit \| commitdiff \| tree
2019-02-17	Ben Soares	JAL-3141 User warning when deleting old backup files...	commit \| commitdiff \| tree
2019-02-15	Ben Soares	JAL-3141 re-order deletion of old files and check lastModifi...	commit \| commitdiff \| tree
2019-02-14	Ben Soares	JAL-3141 Added warning/confirmation when suffixReverse...	commit \| commitdiff \| tree
2019-02-14	Ben Soares	JAL-3141 Moved 'Previously saved scheme' combo box...	commit \| commitdiff \| tree
2019-02-01	Ben Soares	JAL-3141 Slight efficiency gain in detecting backupfiles...	commit \| commitdiff \| tree
2019-01-30	Ben Soares	JAL-3141 Enabled the 'Include backpup files' checkbox...	commit \| commitdiff \| tree
2019-01-29	Ben Soares	JAL-3141 Found a good fix for updating the FileChooser...	commit \| commitdiff \| tree
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