jalview.git
2019-05-24 Ben SoaresJAL-3141 Fixed tests
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the...
2019-05-22 Ben SoaresMerge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis...
2019-05-22 gmungocJAL-3111 help file spelling correction
2019-05-21 gmungocJAL-3273 small correction to expected result calculation
2019-05-13 Jim ProcterMerge branch 'task/JAL-3247_Install4j_improvements...
2019-05-13 Ben SoaresMerge branch 'task/JAL-3236_install4j_linux_unix_userla...
2019-05-13 Ben SoaresJAL-3247 nogradle option on this mac build/install...
2019-05-13 Ben SoaresJAL-3247 JAL-3254 JAL-3260 Fixed: JVL file jalview...
2019-05-10 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into...
2019-05-10 Ben SoaresJAL-3246 JAL-3247 Reworked JVL files as getdown.txt...
2019-05-10 Jim ProcterMerge branch 'task/JAL-3236_install4j_linux_unix_userla...
2019-05-09 Ben SoaresJAL-3236 Added unixInstaller to install4jMediaTypes...
2019-05-09 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into...
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Ensure .jvp and .jvl appear first...
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Fixed file association launch behavio...
2019-05-08 Ben SoaresJAL-3246 add -Pgetdown_local=true to use local files
2019-05-08 Ben SoaresJAL-3247 JAL-3254 changing default location of jalview...
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Getdown now opening any files thrown...
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Automatically creating correct file...
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Automatically creating correct file...
2019-05-08 Ben SoaresJAL-3247 Script to produce auto file association files...
2019-05-08 Ben SoaresJAL-3247 Note in launcher.log when using a JVL file
2019-05-07 Ben SoaresJAL-3247 Changed JVL file to be a props file, with...
2019-05-07 Ben SoaresJAL-3247 Script to automatically install Jalview from...
2019-05-07 Ben SoaresJAL-3247 Auto generated file associations from jalview...
2019-05-06 Ben SoaresJAL-3247 Allowing 'file' protocol URL with empty domain...
2019-05-06 Ben SoaresJAL-3247 Code changes to getdown. Double click open...
2019-05-06 Ben SoaresJAL-3247 improvements
2019-05-06 Ben SoaresJAL-3247 Some getdown image file changes/tidying
2019-05-06 gmungocJAL-3240 known issue for release notes
2019-05-06 gmungocJAL-3239 release note
2019-05-06 gmungocJAL-3244 release note
2019-05-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-3239monosp...
2019-05-06 gmungocJAL-3244 delete obsolete method
2019-05-03 Ben SoaresJAL-3247 First attempt at getdown code to add macOS...
2019-05-03 Ben SoaresJAL-3247 Part way towards adding double-click opening...
2019-05-02 Ben SoaresJAL-3247 Improved file associations on macOS and Windows
2019-05-02 gmungocJAL-3239 draw EPS or SVG one character at a time (even... bug/JAL-3239monospacedEps
2019-05-02 gmungocMerge branch 'bug/JAL-3244jmolWindows' into develop
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows
2019-05-02 Ben Soaresadding another getdown file (produced during a getdown...
2019-05-02 Ben SoaresJAL-3247 jvp jvl File associations, JRE variablised...
2019-05-01 Ben SoaresFixed -Djvl=true in install4j JVM invocation
2019-05-01 Ben SoaresExtra JVL file association in the installer. Shadowed...
2019-05-01 gmungocJAL-3244 ignore file path separator when comparing...
2019-05-01 Ben SoaresMerge branch 'task/JAL-3243_PDB_free_text_error' into...
2019-04-30 Ben SoaresJAL-3243 Replaced javax.ws jar compatible with jersey... task/JAL-3243_PDB_free_text_error
2019-04-30 Ben SoaresJAL-3196 Correcting the source for getdown (already...
2019-04-30 gmungocJAL-3241 simplified enum constructors for classloadabil...
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF...
2019-04-29 gmungocJAL-3003 help page mention EPS doesn't support transparency
2019-04-26 Jim ProcterJAL-3236 see also previous commit - tweak the install4j...
2019-04-26 Ben SoaresAdded a unixInstaller and unixArchive media-type to...
2019-04-26 Ben SoaresMerge branch 'develop' of https://source.jalview.org...
2019-04-26 Ben SoaresRemoving old commented out 'org.gradle.java.home='...
2019-04-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2019-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2019-04-26 gmungocJAL-2743 class Javadoc
2019-04-26 gmungocJAL-2738 JAL-2743 properties to map VCF header to speci...
2019-04-26 Ben SoaresAlso removing eclipse .project and .settings from the...
2019-04-26 Ben SoaresRemoving .classpath from this branch
2019-04-26 Jim ProcterJAL-3150 examples/exampleFile.jvp for updated manual...
2019-04-26 Ben SoaresJAL-3233 Added isAMac check for -Xdock:icon addition...
2019-04-26 gmungocJAL-3010 borderless 'x' for "delete this filter condition"
2019-04-26 gmungocJAL-2808 better tooltip 'delete this condition'
2019-04-25 Jalview Build BoxJAL-3234 tidy up stdout on build
2019-04-25 Jalview Build BoxJAL-3234 allow gradle builds to run without having...
2019-04-25 Jalview Build BoxMerge branch 'task/JAL-3234_211_codesigning' into develop
2019-04-25 Jalview Build BoxMerge branch 'bug/JAL-3224_getdown_changed_to_unpack_tg...
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Fixed help image mangling, moved...
2019-04-25 Jalview Build BoxMerge branch 'bug/JAL-3224_getdown_changed_to_unpack_tg...
2019-04-25 Jalview Build BoxJAL-3234 enable codesigning and executable-post-process...
2019-04-25 Jalview Build BoxJAL-3234 Gradle properties for signing: OSX_KEYSTORE...
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template...
2019-04-25 Ben SoaresJAL-3224 JAL-3225 To be compatible with install4j bundl...
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates...
2019-04-25 Ben SoaresJAL-3224 Tidied up Network installers in install4j...
2019-04-24 Ben SoaresJAL-3224 minor fix for build.gradle and gradle eclipse
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building...
2019-04-24 Jim ProcterJAL-1929 JAL-3224 java 8 and java 11 specific getdown...
2019-04-24 Jim ProcterJAL-1929 JAL-3224 JRE getdown URLs must be relative...
2019-04-23 Jim ProcterJAL-3130 add JAVA_VERSION to shadowJar classifier so...
2019-04-23 Jim ProcterJAL-3130 make sure only libDistDir/*.jar are added...
2019-04-23 Jim ProcterMerge branch 'develop' into bug/JAL-3224_getdown_change...
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown artefacts staged as getdown...
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown channel structure is {build...
2019-04-22 Jim ProcterJAL-3224 JAL-3196 still trying to specify projectFile...
2019-04-22 Jim ProcterJAL-3224 JAL-3196 still trying to specify projectFile...
2019-04-22 Jim ProcterJAL-3224 JAL-3196 specify file object in projectFile...
2019-04-22 Jim ProcterJAL-3130 JAL-3224 patch URL paths to point to jalview...
2019-04-22 Jim ProcterJAL-3130 provide absolute module path as J11 compile...
2019-04-22 Jim ProcterMerge branch 'jims/JAL-3130_Java11_Gradle_publishing...
2019-04-20 gmungocJAL-2791 tailored message if find fails on selection...
2019-04-18 gmungocJAL-1793 basic help text for VCF option
2019-04-18 gmungocJAL-3111 additional release notes
2019-04-18 gmungocJAL-3111 small simplification of table tags, valign top
2019-04-18 gmungocJAL-3111 release notes first pass complete
2019-04-18 Ben SoaresJAL-3130 moved jar needed for getdown to libs (not...
2019-04-18 Ben SoaresJAL-3224 Removed JREs (these now need to be in ~/buildt...
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