web site minor tweaks

[jabaws.git] / IDEAS.txt

diff --git a/IDEAS.txt b/IDEAS.txt
index bab0292..ba3b9eb 100644 (file)
--- a/IDEAS.txt
+++ b/IDEAS.txt
@@ -1,5 +1,49 @@
 FUTURE TODO\r
 \r
+Pack the test cases and build file to run them in one of the distributives \r
+\r
+? Better native Mac support (and maybe abandon native windows support in \r
+favour of VM)\r
+\r
+Cluster stats: \r
+ -Remove hyperlinks from tasks which workdirs were removed \r
+ Way to do: Crawler is to update DB records if the directory is not found to prevent link \r
+generation for stats. \r
+ -graph generation \r
+ -user documentation (do not forget how to enable follow symlinks!)\r
+   \r
+Webpage for testing web services?\r
+\r
+Add interface for Jalview annotation \r
+\r
+Develop generic Interface to return Jalview annotation for easy to add new \r
+services (?) \r
+\r
+Philogeny Mrbayes + Philip\r
+ \r
+USE CASE - TURN ALIGNMENT INTO PROFILE AND SEARCH SEQUENCE DATABASE USECASE\r
+- Receive user alignment \r
+- use hmmerbuild to turn it to profile\r
+- use hmmersearch to search the database \r
+\r
+#END OF - TURN ALIGNMENT INTO PROFILE AND SEARCH SEQUENCE DATABASE USECASE \r
+\r
+New data model for representing psiblast,blast,phmmer,jackhmmer results\r
+\r
+new parsers for the above programmes output (Stockholm MSA format?)\r
+\r
+Think hard on what to do with large output files? \r
+e.g. serve the hits table in full, but retrieve alignments on demand.\r
+What actually needs to be sent?   \r
+\r
+\r
+Add facility to distribute other results of the calculations like the trees and \r
+annotation file for probcons. \r
+\r
+(later) WRAP Amps\r
+\r
+(later) Implement utility to rerun died tasks from command line\r
+\r
 Registry for jalview WS - gives list of web services providers\r
  - checks the status of the web services\r
  - web service providers gives list of available WS\r