JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / 2Dpfold_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/2Dpfold_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/2Dpfold_8h_source.tex
index fb94714..b78d7ea 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/2Dpfold_8h_source.tex
+++ b/binaries/src/ViennaRNA/doc/latex/2Dpfold_8h_source.tex
@@ -1,8 +1,9 @@
-\hypertarget{2Dpfold_8h}{\section{2\-Dpfold.h}
-\label{2Dpfold_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/2\-Dpfold.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/2\-Dpfold.\-h}}
+\hypertarget{2Dpfold_8h_source}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dpfold.h}
 }
 
-\begin{DoxyCode}
+
+\begin{footnotesize}\begin{alltt}
 00001 \textcolor{comment}{/*}
 00002 \textcolor{comment}{      minimum free energy}
 00003 \textcolor{comment}{      RNA secondary structure with}
@@ -12,7 +13,7 @@
 00007 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_TWO\_D\_PF\_FOLD\_H\_\_}
 00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_TWO\_D\_PF\_FOLD\_H\_\_}
 00009 \textcolor{preprocessor}{}
-00010 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
+00010 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
 00011 
 00012 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
 00013 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
@@ -20,42 +21,39 @@
 00015 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func}
 00016 \textcolor{preprocessor}{}\textcolor{preprocessor}{#endif}
 00017 \textcolor{preprocessor}{}
-00042 \hyperlink{structTwoDpfold__vars}{TwoDpfold\_vars}  *\hyperlink{group__kl__neighborhood__pf_ga1aca740e2a75ab2b2951538266e53d64}{get\_TwoDpfold\_variables}( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *seq,
+00042 \hyperlink{structTwoDpfold__vars}{TwoDpfold_vars}  *\hyperlink{group__kl__neighborhood__pf_ga1aca740e2a75ab2b2951538266e53d64}{get_TwoDpfold_variables}( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *seq,
 00043                                           \textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure1,
 00044                                           \textcolor{keywordtype}{char} *structure2,
 00045                                           \textcolor{keywordtype}{int} circ);
 00046 
-00059 \hyperlink{structTwoDpfold__vars}{TwoDpfold\_vars}  *\hyperlink{group__kl__neighborhood__pf_gacc2f66da7ee62096cab629fce7112216}{get\_TwoDpfold\_variables\_from\_MFE}(
-      \hyperlink{structTwoDfold__vars}{TwoDfold\_vars} *mfe\_vars);
+00059 \hyperlink{structTwoDpfold__vars}{TwoDpfold_vars}  *\hyperlink{group__kl__neighborhood__pf_gacc2f66da7ee62096cab629fce7112216}{get_TwoDpfold_variables_from_MFE}(\hyperlink{structTwoDfold__vars}{TwoDfold_vars} *mfe\_vars);
 00060 
-00071 \textcolor{keywordtype}{void}            \hyperlink{group__kl__neighborhood__pf_gafe994291458ee2ac34d3eb825ef62a15}{destroy\_TwoDpfold\_variables}(
-      \hyperlink{structTwoDpfold__vars}{TwoDpfold\_vars} *vars);
+00071 \textcolor{keywordtype}{void}            \hyperlink{group__kl__neighborhood__pf_gafe994291458ee2ac34d3eb825ef62a15}{destroy_TwoDpfold_variables}(\hyperlink{structTwoDpfold__vars}{TwoDpfold_vars} *vars);
 00072 
-00094 \hyperlink{structTwoDpfold__solution}{TwoDpfold\_solution}  *\hyperlink{group__kl__neighborhood__pf_ga3e1cd3b24eb635c65181182cbb4ae3eb}{TwoDpfoldList}( 
-      \hyperlink{structTwoDpfold__vars}{TwoDpfold\_vars} *vars,
+00094 \hyperlink{structTwoDpfold__solution}{TwoDpfold_solution}  *\hyperlink{group__kl__neighborhood__pf_ga3e1cd3b24eb635c65181182cbb4ae3eb}{TwoDpfoldList}( \hyperlink{structTwoDpfold__vars}{TwoDpfold_vars} *vars,
 00095                                     \textcolor{keywordtype}{int} maxDistance1,
 00096                                     \textcolor{keywordtype}{int} maxDistance2);
 00097  \textcolor{comment}{/* End of group kl\_neighborhood\_pf */}
 00099 
-00123 \textcolor{keywordtype}{char}            *\hyperlink{group__kl__neighborhood__stochbt_gae251288f50dd4ae7d315af0085775f71}{TwoDpfold\_pbacktrack}(\hyperlink{structTwoDpfold__vars}{TwoDpfold\_vars} *vars,
+00123 \textcolor{keywordtype}{char}            *\hyperlink{group__kl__neighborhood__stochbt_gae251288f50dd4ae7d315af0085775f71}{TwoDpfold_pbacktrack}(\hyperlink{structTwoDpfold__vars}{TwoDpfold_vars} *vars,
 00124                                       \textcolor{keywordtype}{int} d1,
 00125                                       \textcolor{keywordtype}{int} d2);
 00126 
-00146 \textcolor{keywordtype}{char}            *\hyperlink{group__kl__neighborhood__stochbt_ga13430ac6a7f90df426774f131647d2c7}{TwoDpfold\_pbacktrack5}( \hyperlink{structTwoDpfold__vars}{TwoDpfold\_vars} *vars,
+00146 \textcolor{keywordtype}{char}            *\hyperlink{group__kl__neighborhood__stochbt_ga13430ac6a7f90df426774f131647d2c7}{TwoDpfold_pbacktrack5}( \hyperlink{structTwoDpfold__vars}{TwoDpfold_vars} *vars,
 00147                                           \textcolor{keywordtype}{int} d1,
 00148                                           \textcolor{keywordtype}{int} d2,
 00149                                           \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} length);
 00150  \textcolor{comment}{/* End of group kl\_neighborhood\_stochbt */}
 00152 
-00158 DEPRECATED(FLT\_OR\_DBL          **TwoDpfold(\hyperlink{structTwoDpfold__vars}{TwoDpfold\_vars} *our\_variables,
+00158 DEPRECATED(FLT\_OR\_DBL          **TwoDpfold(\hyperlink{structTwoDpfold__vars}{TwoDpfold_vars} *our\_variables,
 00159                                 \textcolor{keywordtype}{int} maxDistance1,
 00160                                 \textcolor{keywordtype}{int} maxDistance2));
 00161 
 00167 DEPRECATED(FLT\_OR\_DBL          **TwoDpfold\_circ(
-00168                                 \hyperlink{structTwoDpfold__vars}{TwoDpfold\_vars} *our\_variables,
+00168                                 \hyperlink{structTwoDpfold__vars}{TwoDpfold_vars} *our\_variables,
 00169                                 \textcolor{keywordtype}{int} maxDistance1,
 00170                                 \textcolor{keywordtype}{int} maxDistance2));
 00171 
 00172 
 00173 \textcolor{preprocessor}{#endif}
-\end{DoxyCode}
+\end{alltt}\end{footnotesize}