JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / ali__plex_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/ali__plex_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/ali__plex_8h_source.tex
index 1a5aa3e..42412ad 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/ali__plex_8h_source.tex
+++ b/binaries/src/ViennaRNA/doc/latex/ali__plex_8h_source.tex
@@ -1,12 +1,13 @@
-\hypertarget{ali__plex_8h}{\section{ali\-\_\-plex.\-h}
-\label{ali__plex_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/ali\-\_\-plex.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/ali\-\_\-plex.\-h}}
+\hypertarget{ali__plex_8h_source}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/ali\_\-plex.h}
 }
 
-\begin{DoxyCode}
+
+\begin{footnotesize}\begin{alltt}
 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_ALI\_PLEX\_H\_\_}
 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_ALI\_PLEX\_H\_\_}
 00003 \textcolor{preprocessor}{}
-00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
+00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
 00008 \hyperlink{structduplexT}{duplexT}** aliLduplexfold( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s1[],
 00009                           \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s2[],
 00010                           \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshold,
@@ -32,9 +33,11 @@
 00033                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} b\_b);
 00034 
 00035 \textcolor{comment}{/*}
-00036 \textcolor{comment}{extern duplexT aliduplexfold(const char *s1[], const char *s2[], const int extension\_cost);}
-00037 \textcolor{comment}{extern duplexT aliduplexfold\_XS(const char *s1[], const char *s2[],const int **access\_s1, }
+00036 \textcolor{comment}{extern duplexT aliduplexfold(const char *s1[], const char *s2[], const int extens
+      ion\_cost);}
+00037 \textcolor{comment}{extern duplexT aliduplexfold\_XS(const char *s1[], const char *s2[],const int **ac
+      cess\_s1, }
 00038 \textcolor{comment}{const int **access\_s2, const int i\_pos, const int j\_pos, const int threshold);}
 00039 \textcolor{comment}{*/}
 00040 \textcolor{preprocessor}{#endif}
-\end{DoxyCode}
+\end{alltt}\end{footnotesize}