JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / cofold_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/cofold_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/cofold_8h_source.tex
index 4b49e78..0fc35e6 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/cofold_8h_source.tex
+++ b/binaries/src/ViennaRNA/doc/latex/cofold_8h_source.tex
@@ -1,12 +1,13 @@
-\hypertarget{cofold_8h}{\section{cofold.\-h}
-\label{cofold_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/cofold.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/cofold.\-h}}
+\hypertarget{cofold_8h_source}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/cofold.h}
 }
 
-\begin{DoxyCode}
+
+\begin{footnotesize}\begin{alltt}
 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_COFOLD\_H\_\_}
 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_COFOLD\_H\_\_}
 00003 \textcolor{preprocessor}{}
-00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
+00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
 00005 
 00006 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
 00007 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
@@ -17,19 +18,19 @@
 00065 \textcolor{keywordtype}{float} \hyperlink{group__mfe__cofold_gabc8517f22cfe70595ee81fc837910d52}{cofold}( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *sequence,
 00066               \textcolor{keywordtype}{char} *structure);
 00067 
-00072 \textcolor{keywordtype}{float} \hyperlink{group__mfe__cofold_gafe430060533f14b11fc611f60b3f1f6f}{cofold\_par}( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
+00072 \textcolor{keywordtype}{float} \hyperlink{group__mfe__cofold_gafe430060533f14b11fc611f60b3f1f6f}{cofold_par}( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
 00073                   \textcolor{keywordtype}{char} *structure,
 00074                   \hyperlink{structparamT}{paramT} *parameters,
 00075                   \textcolor{keywordtype}{int} is\_constrained);
 00076 
-00080 \textcolor{keywordtype}{void}      \hyperlink{group__mfe__cofold_gaafb33d7473eb9af9d1b168ca8761c41a}{free\_co\_arrays}(\textcolor{keywordtype}{void});
+00080 \textcolor{keywordtype}{void}      \hyperlink{group__mfe__cofold_gaafb33d7473eb9af9d1b168ca8761c41a}{free_co_arrays}(\textcolor{keywordtype}{void});
 00081 
-00085 \textcolor{keywordtype}{void}      \hyperlink{group__mfe__cofold_ga4fcbf34e77b99bfbb2333d2ab0c41a57}{update\_cofold\_params}(\textcolor{keywordtype}{void});
+00085 \textcolor{keywordtype}{void}      \hyperlink{group__mfe__cofold_ga4fcbf34e77b99bfbb2333d2ab0c41a57}{update_cofold_params}(\textcolor{keywordtype}{void});
 00086 
 00087 \textcolor{keywordtype}{void}      update\_cofold\_params\_par(\hyperlink{structparamT}{paramT} *parameters);
 00088 
 00089 
-00105 \textcolor{keywordtype}{void} \hyperlink{group__mfe__cofold_ga5f5bf4df35d0554f6ace9579f8744c48}{export\_cofold\_arrays\_gq}( \textcolor{keywordtype}{int} **f5\_p,
+00105 \textcolor{keywordtype}{void} \hyperlink{group__mfe__cofold_ga5f5bf4df35d0554f6ace9579f8744c48}{export_cofold_arrays_gq}( \textcolor{keywordtype}{int} **f5\_p,
 00106                               \textcolor{keywordtype}{int} **c\_p,
 00107                               \textcolor{keywordtype}{int} **fML\_p,
 00108                               \textcolor{keywordtype}{int} **fM1\_p,
@@ -38,7 +39,7 @@
 00111                               \textcolor{keywordtype}{int} **indx\_p,
 00112                               \textcolor{keywordtype}{char} **ptype\_p);
 00113 
-00128 \textcolor{keywordtype}{void} \hyperlink{group__mfe__cofold_ga5cb6b59983f1f74ccc00b9b9c4e84482}{export\_cofold\_arrays}(\textcolor{keywordtype}{int} **f5\_p,
+00128 \textcolor{keywordtype}{void} \hyperlink{group__mfe__cofold_ga5cb6b59983f1f74ccc00b9b9c4e84482}{export_cofold_arrays}(\textcolor{keywordtype}{int} **f5\_p,
 00129                           \textcolor{keywordtype}{int} **c\_p,
 00130                           \textcolor{keywordtype}{int} **fML\_p,
 00131                           \textcolor{keywordtype}{int} **fM1\_p,
@@ -49,14 +50,14 @@
 00136 
 00153 \hyperlink{structSOLUTION}{SOLUTION}  *\hyperlink{group__subopt__zuker_ga0d5104e3ecf119d8eabd40aa5fe47f90}{zukersubopt}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *\textcolor{keywordtype}{string});
 00154 
-00161 \hyperlink{structSOLUTION}{SOLUTION}  *\hyperlink{group__subopt__zuker_ga6d98a9450d1affadf144ac79f543da8c}{zukersubopt\_par}( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
+00161 \hyperlink{structSOLUTION}{SOLUTION}  *\hyperlink{group__subopt__zuker_ga6d98a9450d1affadf144ac79f543da8c}{zukersubopt_par}( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
 00162                             \hyperlink{structparamT}{paramT} *parameters);
 00163 
-00172 \textcolor{keywordtype}{void} \hyperlink{cofold_8h_a4958b517c613e4d2afd5bce6c1060a79}{get\_monomere\_mfes}( \textcolor{keywordtype}{float} *e1,
+00172 \textcolor{keywordtype}{void} \hyperlink{cofold_8h_a4958b517c613e4d2afd5bce6c1060a79}{get_monomere_mfes}( \textcolor{keywordtype}{float} *e1,
 00173                         \textcolor{keywordtype}{float} *e2);
 00174 
 00175 
-00180 DEPRECATED(\textcolor{keywordtype}{void} \hyperlink{cofold_8h_afee0c32208aa2ac97338b6e3fbad7fa5}{initialize\_cofold}(\textcolor{keywordtype}{int} length));
+00180 DEPRECATED(\textcolor{keywordtype}{void} \hyperlink{cofold_8h_afee0c32208aa2ac97338b6e3fbad7fa5}{initialize_cofold}(\textcolor{keywordtype}{int} length));
 00181 
 00182 \textcolor{preprocessor}{#endif}
-\end{DoxyCode}
+\end{alltt}\end{footnotesize}