JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / part__func__up_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/part__func__up_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/part__func__up_8h_source.tex
index 7363fd4..11f096c 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/part__func__up_8h_source.tex
+++ b/binaries/src/ViennaRNA/doc/latex/part__func__up_8h_source.tex
@@ -1,33 +1,34 @@
-\hypertarget{part__func__up_8h}{\section{part\-\_\-func\-\_\-up.\-h}
-\label{part__func__up_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/part\-\_\-func\-\_\-up.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/part\-\_\-func\-\_\-up.\-h}}
+\hypertarget{part__func__up_8h_source}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/part\_\-func\_\-up.h}
 }
 
-\begin{DoxyCode}
+
+\begin{footnotesize}\begin{alltt}
 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_PART\_FUNC\_UP\_H\_\_}
 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_PART\_FUNC\_UP\_H\_\_}
 00003 \textcolor{preprocessor}{}
-00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
+00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
 00005 
 00006 \textcolor{preprocessor}{#define   RNA\_UP\_MODE\_1   1U}
 00007 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define   RNA\_UP\_MODE\_2   2U}
 00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define   RNA\_UP\_MODE\_3   4U}
 00009 \textcolor{preprocessor}{}
-00055 \hyperlink{structpu__contrib}{pu\_contrib} *\hyperlink{group__up__cofold_ga5b4ee40e190d2f633cd01cf0d2fe93cf}{pf\_unstru}(\textcolor{keywordtype}{char} *sequence,
+00055 \hyperlink{structpu__contrib}{pu_contrib} *\hyperlink{group__up__cofold_ga5b4ee40e190d2f633cd01cf0d2fe93cf}{pf_unstru}(\textcolor{keywordtype}{char} *sequence,
 00056                       \textcolor{keywordtype}{int} max\_w);
 00057 
-00100 \hyperlink{structinteract}{interact} *\hyperlink{group__up__cofold_ga1aa0aa02bc3a724f87360c03097afd00}{pf\_interact}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *s1,
+00100 \hyperlink{structinteract}{interact} *\hyperlink{group__up__cofold_ga1aa0aa02bc3a724f87360c03097afd00}{pf_interact}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *s1,
 00101                       \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s2,
-00102                       \hyperlink{structpu__contrib}{pu\_contrib} *p\_c,
-00103                       \hyperlink{structpu__contrib}{pu\_contrib} *p\_c2,
+00102                       \hyperlink{structpu__contrib}{pu_contrib} *p\_c,
+00103                       \hyperlink{structpu__contrib}{pu_contrib} *p\_c2,
 00104                       \textcolor{keywordtype}{int} max\_w,
 00105                       \textcolor{keywordtype}{char} *cstruc,
 00106                       \textcolor{keywordtype}{int} incr3,
 00107                       \textcolor{keywordtype}{int} incr5);
 00108 
-00112 \textcolor{keywordtype}{void} \hyperlink{group__up__cofold_gadde308fd5f696dc271b1532aa96fd12f}{free\_interact}(\hyperlink{structinteract}{interact} *pin);
+00112 \textcolor{keywordtype}{void} \hyperlink{group__up__cofold_gadde308fd5f696dc271b1532aa96fd12f}{free_interact}(\hyperlink{structinteract}{interact} *pin);
 00113 
-00117 \textcolor{keywordtype}{int} Up\_plot(\hyperlink{structpu__contrib}{pu\_contrib} *p\_c,
-00118             \hyperlink{structpu__contrib}{pu\_contrib} *p\_c\_sh,
+00117 \textcolor{keywordtype}{int} Up\_plot(\hyperlink{structpu__contrib}{pu_contrib} *p\_c,
+00118             \hyperlink{structpu__contrib}{pu_contrib} *p\_c\_sh,
 00119             \hyperlink{structinteract}{interact} *pint,
 00120             \textcolor{keywordtype}{char} *ofile,
 00121             \textcolor{keywordtype}{int} **unpaired\_values,
@@ -35,10 +36,10 @@
 00123             \textcolor{keywordtype}{char} *head,
 00124             \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} mode);
 00125 
-00129 \hyperlink{structpu__contrib}{pu\_contrib}  *get\_pu\_contrib\_struct( \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} n,
+00129 \hyperlink{structpu__contrib}{pu_contrib}  *get\_pu\_contrib\_struct( \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} n,
 00130                                     \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} w);
 00131 
-00135 \textcolor{keywordtype}{void}        \hyperlink{group__up__cofold_gac20bd61824981d45ce0dc9934aa56df8}{free\_pu\_contrib\_struct}(\hyperlink{structpu__contrib}{pu\_contrib} *pu);
+00135 \textcolor{keywordtype}{void}        \hyperlink{group__up__cofold_gac20bd61824981d45ce0dc9934aa56df8}{free_pu_contrib_struct}(\hyperlink{structpu__contrib}{pu_contrib} *pu);
 00136 
 00141 \textcolor{preprocessor}{#endif}
-\end{DoxyCode}
+\end{alltt}\end{footnotesize}