ClustalO compile

[jabaws.git] / binaries / src / compilebin.sh

diff --git a/binaries/src/compilebin.sh b/binaries/src/compilebin.sh
index 405921e..441cdb0 100644 (file)
--- a/binaries/src/compilebin.sh
+++ b/binaries/src/compilebin.sh
@@ -10,17 +10,20 @@ make
 chmod +x src/clustalw2 
 cd ..
 
+echo "Compiling Clustal Omega..."
+cd clustalo
+make clean
+chmod +x ./configure 
+./configure
+make
+cd ..
+
 echo "Compiling Mafft..."
 cd mafft/core
 make clean
 make
-chmod +x mafft 
-cd ../..
-cd mafft/binaries
-chmod +x *
 cd ../..
 
-
 echo "Compiling Mafft dependency fasta34..."
 cd fasta34
 rm *.o
@@ -31,9 +34,8 @@ cd ..
 
 echo "Compiling Muscle..."
 cd muscle
-rm -f *.o
+rm -f *.o muscle
 make
-chmod +x muscle
 cd ..
 
 echo "Compiling Probcons..."
@@ -59,6 +61,7 @@ chmod +x disembl DisEMBL.py
 
 echo "Compiling DisEMBL dependancy Tisean... "
 cd Tisean_3.0.1
+chmod +x ./configure
 ./configure
 make
 cp source_c/sav_gol ../
@@ -67,12 +70,11 @@ echo "DONE"
 chmod +x sav_gol
 cd ..
 
-# TODO copy sav_gol other from disembl
-echo "Compiling GlobPlot..."
+echo "Setting up GlobPlot ..."
+cp disembl/sav_gol globplot/sav_gol
 cd globplot
-echo "DONE"
-# TODO deal with the links
 chmod +x GlobPlot.py
+echo "DONE"
 cd ..
 
 echo "Compiling IUPred..."