Merge branch 'JABAWS_Release_2_0'

[jabaws.git] / binaries / windows / bj3.0.4p-jronn.patch

diff --git a/binaries/windows/bj3.0.4p-jronn.patch b/binaries/windows/bj3.0.4p-jronn.patch
new file mode 100644 (file)
index 0000000..f043b19
--- /dev/null
+++ b/binaries/windows/bj3.0.4p-jronn.patch
@@ -0,0 +1,23 @@
+Index: src/main/java/org/biojava3/ronn/ORonn.java
+===================================================================
+--- src/main/java/org/biojava3/ronn/ORonn.java (revision 9674)
++++ src/main/java/org/biojava3/ronn/ORonn.java (working copy)
+@@ -102,7 +102,9 @@
+               timer = new Timer(TimeUnit.MILLISECONDS);
+       }
+ 
+-      synchronized void writeResults(final float[] meanScores, final char[] seqs) {
++      void writeResults(final float[] meanScores, final char[] seqs) {
++              synchronized (out)
++              {
+               out.println(">" + sequence.getId());
+               if (layout == ResultLayout.VERTICAL) {
+                       for (int i = 0; i < meanScores.length; i++) {
+@@ -124,6 +126,7 @@
+               }
+               out.println();
+               out.flush();
++              }
+       }
+ 
+       static boolean isValidSequence(final FastaSequence fsequence) {