#local.mafft.bin.windows=\r
local.mafft.bin=binaries/src/mafft/binaries/mafft\r
cluster.mafft.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/mafft/core/mafft\r
+# These paths will be converted to absolute if relative.\r
mafft.bin.env=MAFFT_BINARIES#binaries/src/mafft/binaries;FASTA_4_MAFFT#binaries/src/fasta34/fasta34;\r
mafft.--aamatrix.path=binaries/matrices\r
mafft.presets.file=conf/settings/MafftPresets.xml\r
local.iupred.bin.windows=binaries/windows/iupred/iupred.exe \r
local.iupred.bin=binaries/src/iupred/iupred\r
# This must point to the directory where iupred binary is, with other files it depends on\r
-iupred.bin.env=IUPred_PATH#/homes/pvtroshin/workspace/jaba2/binaries/src/iupred\r
+#iupred.bin.env=IUPred_PATH#/homes/pvtroshin/workspace/jaba2/binaries/src/iupred\r
+# This path will be converted to absolute if relative. \r
+iupred.bin.env=IUPred_PATH#binaries/src/iupred\r
cluster.iupred.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/iupred/iupred\r
iupred.parameters.file=conf/settings/IUPredParameters.xml\r
iupred.limits.file=conf/settings/IUPredLimits.xml\r