ClustalO settings

[jabaws.git] / conf / settings / ClustaloLimits.xml

diff --git a/conf/settings/ClustaloLimits.xml b/conf/settings/ClustaloLimits.xml
index ecb8148..1367ff3 100644 (file)
--- a/conf/settings/ClustaloLimits.xml
+++ b/conf/settings/ClustaloLimits.xml
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
 <limits>\r
- <runnerClassName>compbio.runner.clustal.ClustalW</runnerClassName>\r
+ <runnerClassName>compbio.runner.clustal.ClustalO</runnerClassName>\r
        <limit isDefault="true">\r
-               <seqNumber>1000</seqNumber>\r
+               <seqNumber>2000</seqNumber>\r
                <seqLength>1000</seqLength>\r
        </limit>\r
        <limit isDefault="false">\r
@@ -10,12 +10,4 @@
                <seqNumber>30</seqNumber>\r
                <seqLength>500</seqLength>\r
        </limit>\r
-\r
-       <!-- Limits for presets -->\r
-       <limit isDefault="false">\r
-               <preset>Disable gap weighting (Speed-oriented)</preset>\r
-               <seqNumber>1000</seqNumber>\r
-               <seqLength>3000</seqLength>\r
-       </limit>\r
-\r
 </limits>\r