Clean-up, refactoring, commenting. Parameters file containts only options since Jalvi...

[jabaws.git] / conf / settings / RNAalifoldParameters.xml

diff --git a/conf/settings/RNAalifoldParameters.xml b/conf/settings/RNAalifoldParameters.xml
index a730f64..e79c44c 100644 (file)
--- a/conf/settings/RNAalifoldParameters.xml
+++ b/conf/settings/RNAalifoldParameters.xml
@@ -70,7 +70,7 @@
                <optionNames>--MEA</optionNames>
        </options>
        
-       <prmSeparator> </prmSeparator>
+       <prmSeparator> </prmSeparator>  
        
        <parameters isRequired='false'>
                <name>scaling factor</name>
@@ -96,7 +96,7 @@
        </parameters>
        <parameters isRequired='false'>
                <name>Temperature</name>
-               <description>Rescale Energy parameters to Temperature</description>
+               <description>Rescale Energy parameterss to Temperature</description>
                <optionNames>-T</optionNames>
                <defaultValue>37</defaultValue>
                <validValue>
@@ -105,6 +105,7 @@
                        <max>1000000</max>
                </validValue>
        </parameters>
+       
        <parameters isRequired='false'>
                <name>cfactor</name>
                <description>weight of covariance term</description>