Merge branch 'JABAWS_Release_2_0'

[jabaws.git] / runner / compbio / pipeline / _jpred / jpred.prop

diff --git a/runner/compbio/pipeline/_jpred/jpred.prop b/runner/compbio/pipeline/_jpred/jpred.prop
deleted file mode 100644 (file)
index 23ed76d..0000000
--- a/runner/compbio/pipeline/_jpred/jpred.prop
+++ /dev/null
@@ -1,9 +0,0 @@
-## potentially a better set of parameters (esp. -b & -v)\r
-## which avoid PSI-BLAST dying with large number of hits\r
- \r
-# 'soft' filtering of the query sequence\r
-psiblast.prms.set1=-e0.05 -h0.01 -m6 -b10000 -v10000 -j3 -F "m S" \r
-\r
-# stricter searching criteria\r
-psiblast.prms.set2=-e0.001 -h0.0001 -m6 -b10000 -v10000 -j3\r
-psiblast.prms.set3=-e0.05 -h0.01 -m6 -b10000 -v10000 -j3
\ No newline at end of file