Merge branch 'JABAWS_Release_2_0'

[jabaws.git] / runner / compbio / runner / _SkeletalCommandBuilder.java

diff --git a/runner/compbio/runner/_SkeletalCommandBuilder.java b/runner/compbio/runner/_SkeletalCommandBuilder.java
deleted file mode 100644 (file)
index 3767ffb..0000000
--- a/runner/compbio/runner/_SkeletalCommandBuilder.java
+++ /dev/null
@@ -1,121 +0,0 @@
-/* Copyright (c) 2011 Peter Troshin\r
- *  \r
- *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0     \r
- * \r
- *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
- *  Apache License version 2 as published by the Apache Software Foundation\r
- * \r
- *  This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without\r
- *  even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache \r
- *  License for more details.\r
- * \r
- *  A copy of the license is in apache_license.txt. It is also available here:\r
- * @see: http://www.apache.org/licenses/LICENSE-2.0.txt\r
- * \r
- * Any republication or derived work distributed in source code form\r
- * must include this copyright and license notice.\r
- */\r
-package compbio.runner;\r
-\r
-import java.util.ArrayList;\r
-import java.util.Arrays;\r
-import java.util.List;\r
-\r
-import compbio.engine.client.CommandBuilder;\r
-import compbio.engine.client.Executable;\r
-import compbio.engine.client.RunConfiguration;\r
-import compbio.metadata.Limit;\r
-import compbio.metadata.LimitsManager;\r
-\r
-@Deprecated\r
-public abstract class _SkeletalCommandBuilder\r
-               implements\r
-                       Executable<_SkeletalCommandBuilder> {\r
-\r
-       String tmpDirectory;\r
-       String name;\r
-       String email;\r
-       List<String> params = new ArrayList<String>();\r
-\r
-       public _SkeletalCommandBuilder setEmail(String email) {\r
-               this.email = email;\r
-               return this;\r
-       }\r
-\r
-       public _SkeletalCommandBuilder setName(String name) {\r
-               this.name = name;\r
-               return this;\r
-       }\r
-\r
-       public String getName() {\r
-               return name;\r
-       }\r
-\r
-       public String getEmail() {\r
-               return email;\r
-       }\r
-\r
-       public _SkeletalCommandBuilder addParameters(String[] parameters) {\r
-               this.params.addAll(Arrays.asList(parameters));\r
-               return this;\r
-       }\r
-\r
-       public _SkeletalCommandBuilder addParameters(List<String> parameters) {\r
-               this.params.addAll(parameters);\r
-               return this;\r
-       }\r
-\r
-       @Override\r
-       public CommandBuilder<_SkeletalCommandBuilder> getParameters(\r
-                       ExecProvider provider) {\r
-               return null;\r
-       }\r
-\r
-       public _SkeletalCommandBuilder addParameter(String parameter) {\r
-               params.add(parameter);\r
-               return this;\r
-       }\r
-\r
-       @Override\r
-       public <V> V getResults(String directory) {\r
-               // TODO Auto-generated method stub\r
-               return null;\r
-       }\r
-\r
-       @Override\r
-       public Executable<?> loadRunConfiguration(RunConfiguration rconfig) {\r
-               // TODO Auto-generated method stub\r
-               return null;\r
-       }\r
-\r
-       @Override\r
-       public String getOutput() {\r
-               // TODO Auto-generated method stub\r
-               return null;\r
-       }\r
-\r
-       @Override\r
-       public String getError() {\r
-               // TODO Auto-generated method stub\r
-               return null;\r
-       }\r
-\r
-       @Override\r
-       public Limit<_SkeletalCommandBuilder> getLimit(String presetName) {\r
-               // TODO Auto-generated method stub\r
-               return null;\r
-       }\r
-\r
-       @Override\r
-       public LimitsManager<_SkeletalCommandBuilder> getLimits() {\r
-               // TODO Auto-generated method stub\r
-               return null;\r
-       }\r
-\r
-       @Override\r
-       public String getClusterJobSettings() {\r
-               // TODO Auto-generated method stub\r
-               return null;\r
-       }\r
-\r
-}\r