Merge branch 'JABAWS_Release_2_0'

[jabaws.git] / runner / compbio / runner / _impl / BlastParameters.java

diff --git a/runner/compbio/runner/_impl/BlastParameters.java b/runner/compbio/runner/_impl/BlastParameters.java
deleted file mode 100644 (file)
index 7c1179f..0000000
--- a/runner/compbio/runner/_impl/BlastParameters.java
+++ /dev/null
@@ -1,39 +0,0 @@
-/* Copyright (c) 2011 Peter Troshin\r
- *  \r
- *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0     \r
- * \r
- *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
- *  Apache License version 2 as published by the Apache Software Foundation\r
- * \r
- *  This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without\r
- *  even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache \r
- *  License for more details.\r
- * \r
- *  A copy of the license is in apache_license.txt. It is also available here:\r
- * @see: http://www.apache.org/licenses/LICENSE-2.0.txt\r
- * \r
- * Any republication or derived work distributed in source code form\r
- * must include this copyright and license notice.\r
- */\r
-package compbio.runner._impl;\r
-\r
-/**\r
- * Utility class for common Blast parameters\r
- * \r
- * @author pvtroshin TODO\r
- */\r
-public class BlastParameters {\r
-\r
-       private BlastParameters() {\r
-       } // prevent instantiation\r
-\r
-       static String outputName = "output.blast";\r
-       static String outputProfileName = "output.profile";\r
-       static final String parInput = "-i";\r
-       static final String parDatabase = "-d ";\r
-       static final String parOutput = "-o";\r
-       static final String parEvalue = "-e";\r
-       final static String parDel = " ";\r
-       static final String parAlView = "-m 9";\r
-\r
-}\r