Get rind of NativeClusterJob interface as pretty much every jobs best to use some...

[jabaws.git] / runner / compbio / runner / msa / Tcoffee.java

diff --git a/runner/compbio/runner/msa/Tcoffee.java b/runner/compbio/runner/msa/Tcoffee.java
index 98b2313..d6dd3fe 100644 (file)
--- a/runner/compbio/runner/msa/Tcoffee.java
+++ b/runner/compbio/runner/msa/Tcoffee.java
@@ -27,7 +27,6 @@ import org.apache.log4j.Logger;
 \r
 import compbio.data.sequence.Alignment;\r
 import compbio.data.sequence.UnknownFileFormatException;\r
-import compbio.engine.client.ClusterNativeSpecExecutable;\r
 import compbio.engine.client.CommandBuilder;\r
 import compbio.engine.client.Executable;\r
 import compbio.engine.client.PipedExecutable;\r
@@ -38,9 +37,7 @@ import compbio.runner.Util;
 import compbio.util.PropertyHelper;\r
 \r
 public class Tcoffee extends SkeletalExecutable<Tcoffee>\r
-               implements\r
-                       PipedExecutable<Tcoffee>,\r
-                       ClusterNativeSpecExecutable<Tcoffee> {\r
+               implements PipedExecutable<Tcoffee> {\r
 \r
        private static Logger log = Logger.getLogger(Tcoffee.class);\r
 \r
@@ -131,15 +128,11 @@ public class Tcoffee extends SkeletalExecutable<Tcoffee>
                        int cpunum = SkeletalExecutable.getClusterCpuNum(getType());\r
                        if (cpunum != 0) {\r
                                setNCore(cpunum);\r
-                       }\r
+                       } \r
                }\r
                return super.getParameters(provider);\r
        }\r
 \r
-       @Override\r
-       public String getNativeSpecs() {\r
-               return getClusterSettings();\r
-       }\r
 \r
        @SuppressWarnings("unchecked")\r
        @Override\r