Javadoc fixes

[jabaws.git] / runner / compbio / runner / msa / Tcoffee.java

diff --git a/runner/compbio/runner/msa/Tcoffee.java b/runner/compbio/runner/msa/Tcoffee.java
index 3b35875..645b994 100644 (file)
--- a/runner/compbio/runner/msa/Tcoffee.java
+++ b/runner/compbio/runner/msa/Tcoffee.java
@@ -1,6 +1,6 @@
-/* Copyright (c) 2009 Peter Troshin\r
+/* Copyright (c) 2011 Peter Troshin\r
  *  \r
- *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0\r
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0     \r
  * \r
  *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
  *  Apache License version 2 as published by the Apache Software Foundation\r
@@ -27,7 +27,6 @@ import org.apache.log4j.Logger;
 \r
 import compbio.data.sequence.Alignment;\r
 import compbio.data.sequence.UnknownFileFormatException;\r
-import compbio.engine.client.ClusterNativeSpecExecutable;\r
 import compbio.engine.client.CommandBuilder;\r
 import compbio.engine.client.Executable;\r
 import compbio.engine.client.PipedExecutable;\r
@@ -39,8 +38,7 @@ import compbio.util.PropertyHelper;
 \r
 public class Tcoffee extends SkeletalExecutable<Tcoffee>\r
                implements\r
-                       PipedExecutable<Tcoffee>,\r
-                       ClusterNativeSpecExecutable<Tcoffee> {\r
+                       PipedExecutable<Tcoffee> {\r
 \r
        private static Logger log = Logger.getLogger(Tcoffee.class);\r
 \r
@@ -61,8 +59,6 @@ public class Tcoffee extends SkeletalExecutable<Tcoffee>
        private final static String ncorePrm = "-n_core";\r
 \r
        /**\r
-        * \r
-        * @param workDirectory\r
         */\r
        public Tcoffee() {\r
                super(KEY_VALUE_SEPARATOR);\r
@@ -136,14 +132,9 @@ public class Tcoffee extends SkeletalExecutable<Tcoffee>
                return super.getParameters(provider);\r
        }\r
 \r
-       @Override\r
-       public String getNativeSpecs() {\r
-               return getClusterSettings();\r
-       }\r
-\r
        @SuppressWarnings("unchecked")\r
        @Override\r
-       public Class<Executable<Tcoffee>> getType() {\r
-               return (Class<Executable<Tcoffee>>) this.getClass();\r
+       public Class<Tcoffee> getType() {\r
+               return (Class<Tcoffee>) this.getClass();\r
        }\r
 }\r