Re-design jpred.pl input options: no -seq for a file with 1 FASTA record only.

[jabaws.git] / runner / compbio / runner / predictors / Jpred.java

diff --git a/runner/compbio/runner/predictors/Jpred.java b/runner/compbio/runner/predictors/Jpred.java
index 0e08e0a..4d94620 100644 (file)
--- a/runner/compbio/runner/predictors/Jpred.java
+++ b/runner/compbio/runner/predictors/Jpred.java
@@ -65,6 +65,7 @@ public class Jpred extends SkeletalExecutable<Jpred> {
                addParameters(Arrays.asList("-logfile " + STAT_FILE));\r
                addParameters(Arrays.asList("-dbpath " + dbpath));\r
                addParameters(Arrays.asList("-dbname " + dbname));\r
+               addParameters(Arrays.asList("-jabaws"));\r
        }\r
 \r
        // HashMap<Method, float[]>\r