ScoreManager result = analize(inputFile,\r
((SequenceAnnotation<T>) msaws), preset, customOptions);\r
\r
- // A System.out.println just for testing!\r
- System.out.println(result.toString());\r
- \r
IOHelper.writeOut(writer, result);\r
} else if (service.getServiceType() == MsaWS.class) {\r
alignment = align(inputFile, (MsaWS<T>) msaws, preset,\r