Refactoring: rename duplicated Util classes

[jabaws.git] / webservices / compbio / ws / server / JpredWS.java

diff --git a/webservices/compbio/ws/server/JpredWS.java b/webservices/compbio/ws/server/JpredWS.java
index 18be1b8..6eb20e7 100644 (file)
--- a/webservices/compbio/ws/server/JpredWS.java
+++ b/webservices/compbio/ws/server/JpredWS.java
@@ -35,6 +35,7 @@ import compbio.engine.Configurator;
 import compbio.engine.client.ConfiguredExecutable;\r
 import compbio.engine.client.Executable;\r
 import compbio.engine.client.SkeletalExecutable;\r
+import compbio.engine.client.EngineUtil;\r
 import compbio.metadata.ChunkHolder;\r
 import compbio.metadata.JobStatus;\r
 import compbio.metadata.JobSubmissionException;\r
@@ -46,7 +47,7 @@ import compbio.metadata.PresetManager;
 import compbio.metadata.ResultNotAvailableException;\r
 import compbio.metadata.RunnerConfig;\r
 import compbio.metadata.WrongParameterException;\r
-import compbio.runner.Util;\r
+import compbio.runner.RunnerUtil;\r
 import compbio.runner.predictors.Jpred;\r
 \r
 @WebService(endpointInterface = "compbio.data.msa.MsaWS", targetNamespace = JABAService.SERVICE_NAMESPACE, serviceName = "JpredWS")\r
@@ -54,9 +55,9 @@ public class JpredWS implements MsaWS<Jpred> {
 \r
        private static Logger log = Logger.getLogger(JpredWS.class);\r
 \r
-       private static final RunnerConfig<Jpred> jpredOptions = Util.getSupportedOptions(Jpred.class);\r
-       private static final PresetManager<Jpred> jpredPresets = Util.getPresets(Jpred.class);\r
-       private static final LimitsManager<Jpred> limitMan = compbio.engine.client.Util.getLimits(new Jpred().getType());\r
+       private static final RunnerConfig<Jpred> jpredOptions = RunnerUtil.getSupportedOptions(Jpred.class);\r
+       private static final PresetManager<Jpred> jpredPresets = RunnerUtil.getPresets(Jpred.class);\r
+       private static final LimitsManager<Jpred> limitMan = EngineUtil.getLimits(new Jpred().getType());\r
 \r
        @Override\r
        public String align(List<FastaSequence> sequences)\r