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[jabaws.git] / webservices / compbio / ws / server / MafftWS.java

diff --git a/webservices/compbio/ws/server/MafftWS.java b/webservices/compbio/ws/server/MafftWS.java
index 63de39b..f293ae7 100644 (file)
--- a/webservices/compbio/ws/server/MafftWS.java
+++ b/webservices/compbio/ws/server/MafftWS.java
@@ -66,7 +66,7 @@ public class MafftWS implements MsaWS<Mafft> {
                        throws JobSubmissionException {\r
                WSUtil.validateFastaInput(sequences);\r
                ConfiguredExecutable<Mafft> confMafft = init(sequences);\r
-               return WSUtil.align(sequences, confMafft, null, "align", getLimit(""));\r
+               return WSUtil.align(sequences, confMafft, log, "align", getLimit(""));\r
        }\r
 \r
        ConfiguredExecutable<Mafft> init(List<FastaSequence> dataSet)\r
@@ -88,7 +88,7 @@ public class MafftWS implements MsaWS<Mafft> {
                                Mafft.KEY_VALUE_SEPARATOR);\r
                log.info("Setting parameters: " + params);\r
                confMafft.addParameters(params);\r
-               return WSUtil.align(sequences, confMafft, null, "customAlign",\r
+               return WSUtil.align(sequences, confMafft, log, "customAlign",\r
                                getLimit(""));\r
        }\r
 \r
@@ -106,7 +106,7 @@ public class MafftWS implements MsaWS<Mafft> {
                // particular preset is not found\r
                Limit<Mafft> limit = getLimit(preset.getName());\r
 \r
-               return WSUtil.align(sequences, confMafft, null, "presetAlign", limit);\r
+               return WSUtil.align(sequences, confMafft, log, "presetAlign", limit);\r
        }\r
 \r
        @SuppressWarnings("unchecked")\r