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[jabaws.git] / webservices / compbio / ws / server / ProbconsWS.java

diff --git a/webservices/compbio/ws/server/ProbconsWS.java b/webservices/compbio/ws/server/ProbconsWS.java
index 3d80cad..71f4730 100644 (file)
--- a/webservices/compbio/ws/server/ProbconsWS.java
+++ b/webservices/compbio/ws/server/ProbconsWS.java
@@ -63,8 +63,8 @@ public class ProbconsWS implements MsaWS<Probcons> {
                        throws JobSubmissionException {\r
                WSUtil.validateFastaInput(sequences);\r
                ConfiguredExecutable<Probcons> confProbcons = init(sequences);\r
-               return WSUtil.align(sequences, confProbcons, null, "align",\r
-                               getLimit(""));\r
+               return WSUtil\r
+                               .align(sequences, confProbcons, log, "align", getLimit(""));\r
        }\r
 \r
        ConfiguredExecutable<Probcons> init(List<FastaSequence> dataSet)\r
@@ -86,7 +86,7 @@ public class ProbconsWS implements MsaWS<Probcons> {
                                Probcons.KEY_VALUE_SEPARATOR);\r
                log.info("Setting parameters:" + params);\r
                confProbcons.addParameters(params);\r
-               return WSUtil.align(sequences, confProbcons, null, "customAlign",\r
+               return WSUtil.align(sequences, confProbcons, log, "customAlign",\r
                                getLimit(""));\r
        }\r
 \r
@@ -101,8 +101,7 @@ public class ProbconsWS implements MsaWS<Probcons> {
                ConfiguredExecutable<Probcons> confProbcons = init(sequences);\r
                confProbcons.addParameters(preset.getOptions());\r
                Limit<Probcons> limit = getLimit(preset.getName());\r
-               return WSUtil\r
-                               .align(sequences, confProbcons, null, "presetAlign", limit);\r
+               return WSUtil.align(sequences, confProbcons, log, "presetAlign", limit);\r
        }\r
 \r
        @SuppressWarnings("unchecked")\r