git://source.jalview.org / jabaws.git / blobdiff
? search:
summary | shortlog | log | commit | commitdiff | tree
raw | inline | side by side
web pages updates to point to new download location also the redirect servlet
[jabaws.git] / website / dm_javadoc / compbio / data / sequence / package-summary.html
diff --git a/website/dm_javadoc/compbio/data/sequence/package-summary.html b/website/dm_javadoc/compbio/data/sequence/package-summary.html
index 1609e36..8bc97dc 100644 (file)
--- a/website/dm_javadoc/compbio/data/sequence/package-summary.html
+++ b/website/dm_javadoc/compbio/data/sequence/package-summary.html
@@ -2,12 +2,12 @@
 <!--NewPage-->\r
 <HTML>\r
 <HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_21) on Wed Nov 24 12:17:18 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:04 BST 2011 -->\r
 <TITLE>\r
 compbio.data.sequence\r
 </TITLE>\r
 \r
-<META NAME="date" CONTENT="2010-11-24">\r
+<META NAME="date" CONTENT="2011-08-12">\r
 \r
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
 \r
@@ -55,7 +55,7 @@ function windowTitle()
 \r
 <TR>\r
 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
-&nbsp;<A HREF="../../../compbio/data/msa/package-summary.html"><B>PREV PACKAGE</B></A>&nbsp;\r
+&nbsp;<A HREF="../../../compbio/data/msa/jaxws/package-summary.html"><B>PREV PACKAGE</B></A>&nbsp;\r
 &nbsp;<A HREF="../../../compbio/metadata/package-summary.html"><B>NEXT PACKAGE</B></A></FONT></TD>\r
 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
   <A HREF="../../../index.html?compbio/data/sequence/package-summary.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
@@ -108,10 +108,30 @@ A data model for multiple sequence alignment web services and utility methods
 <TD>Tools to read and write clustal formated files</TD>\r
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence">FastaReader</A></B></TD>\r
+<TD>Reads files with FASTA formatted sequences.</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A></B></TD>\r
 <TD>A FASTA formatted sequence.</TD>\r
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</A></B></TD>\r
+<TD>&nbsp;</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A></B></TD>\r
+<TD>A value class for AACon annotation results storage.</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></B></TD>\r
+<TD>&nbsp;</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence">ScoreManager.ScoreHolder</A></B></TD>\r
+<TD>&nbsp;</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A></B></TD>\r
 <TD>Utility class for operations on sequences</TD>\r
 </TR>\r
@@ -126,9 +146,21 @@ A data model for multiple sequence alignment web services and utility methods
 <B>Enum Summary</B></FONT></TH>\r
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A></B></TD>\r
+<TD>Enumeration listing of all the supported methods.</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence">DisorderMethod</A></B></TD>\r
+<TD>&nbsp;</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A></B></TD>\r
 <TD>The list of programmes that can produce alignments</TD>\r
 </TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A></B></TD>\r
+<TD>Enumeration defining two constraints for SMERFS columns score calculation.</TD>\r
+</TR>\r
 </TABLE>\r
 &nbsp;\r
 \r
@@ -195,7 +227,7 @@ A data model for multiple sequence alignment web services and utility methods
 \r
 <TR>\r
 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
-&nbsp;<A HREF="../../../compbio/data/msa/package-summary.html"><B>PREV PACKAGE</B></A>&nbsp;\r
+&nbsp;<A HREF="../../../compbio/data/msa/jaxws/package-summary.html"><B>PREV PACKAGE</B></A>&nbsp;\r
 &nbsp;<A HREF="../../../compbio/metadata/package-summary.html"><B>NEXT PACKAGE</B></A></FONT></TD>\r
 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
   <A HREF="../../../index.html?compbio/data/sequence/package-summary.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r