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-<!-- Generated by javadoc (build 1.6.0_21) on Thu Dec 09 12:00:29 GMT 2010 -->\r
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O-Index\r
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-<META NAME="date" CONTENT="2010-12-09">\r
+<META NAME="date" CONTENT="2011-08-12">\r
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<A NAME="_O_"><!-- --></A><H2>\r
<B>O</B></H2>\r
<DL>\r
+<DT><A HREF="../compbio/data/sequence/SequenceUtil.html#openInputStream(java.lang.String)"><B>openInputStream(String)</B></A> - \r
+Static method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A>\r
+<DD>Reads and parses Fasta or Clustal formatted file into a list of
+ FastaSequence objects\r
<DT><A HREF="../compbio/metadata/Option.html" title="class in compbio.metadata"><B>Option</B></A><<A HREF="../compbio/metadata/Option.html" title="type parameter in Option">T</A>> - Class in <A HREF="../compbio/metadata/package-summary.html">compbio.metadata</A><DD>Command line option/flag or multiple exclusive options with no value.<DT><A HREF="../compbio/metadata/Option.html#Option(java.lang.String, java.lang.String)"><B>Option(String, String)</B></A> - \r
Constructor for class compbio.metadata.<A HREF="../compbio/metadata/Option.html" title="class in compbio.metadata">Option</A>\r
<DD> \r