+++ /dev/null
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
-<!--NewPage-->\r
-<HTML>\r
-<HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:04 BST 2011 -->\r
-<TITLE>\r
-Serialized Form\r
-</TITLE>\r
-\r
-<META NAME="date" CONTENT="2011-08-12">\r
-\r
-<LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">\r
-\r
-<SCRIPT type="text/javascript">\r
-function windowTitle()\r
-{\r
- if (location.href.indexOf('is-external=true') == -1) {\r
- parent.document.title="Serialized Form";\r
- }\r
-}\r
-</SCRIPT>\r
-<NOSCRIPT>\r
-</NOSCRIPT>\r
-\r
-</HEAD>\r
-\r
-<BODY BGCOLOR="white" onload="windowTitle();">\r
-<HR>\r
-\r
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-<!-- ========= START OF TOP NAVBAR ======= -->\r
-<A NAME="navbar_top"><!-- --></A>\r
-<A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
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-<TR>\r
-<TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
-<A NAME="navbar_top_firstrow"><!-- --></A>\r
-<TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
- <TR ALIGN="center" VALIGN="top">\r
- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>\r
- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Package</FONT> </TD>\r
- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT> </TD>\r
- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Use</FONT> </TD>\r
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- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A> </TD>\r
- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD>\r
- </TR>\r
-</TABLE>\r
-</TD>\r
-<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
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-</TD>\r
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- <A HREF="serialized-form.html" target="_top"><B>NO FRAMES</B></A> \r
- <SCRIPT type="text/javascript">\r
- <!--\r
- if(window==top) {\r
- document.writeln('<A HREF="allclasses-noframe.html"><B>All Classes</B></A>');\r
- }\r
- //-->\r
-</SCRIPT>\r
-<NOSCRIPT>\r
- <A HREF="allclasses-noframe.html"><B>All Classes</B></A>\r
-</NOSCRIPT>\r
-\r
-\r
-</FONT></TD>\r
-</TR>\r
-</TABLE>\r
-<A NAME="skip-navbar_top"></A>\r
-<!-- ========= END OF TOP NAVBAR ========= -->\r
-\r
-<HR>\r
-<CENTER>\r
-<H1>\r
-Serialized Form</H1>\r
-</CENTER>\r
-<HR SIZE="4" NOSHADE>\r
-\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="center"><FONT SIZE="+2">\r
-<B>Package</B> <B>compbio.data.sequence</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<P>\r
-<A NAME="compbio.data.sequence.UnknownFileFormatException"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
-<B>Class <A HREF="compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence">compbio.data.sequence.UnknownFileFormatException</A> extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang">Exception</A> implements Serializable</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<P>\r
-<B>serialVersionUID: </B>196629543695636854L\r
-\r
-<P>\r
-<A NAME="serializedForm"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
-<TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
-<B>Serialized Fields</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<H3>\r
-file</H3>\r
-<PRE>\r
-<A HREF="http://java.sun.com/javase/6/docs/api/java/io/File.html?is-external=true" title="class or interface in java.io">File</A> <B>file</B></PRE>\r
-<DL>\r
-<DL>\r
-</DL>\r
-</DL>\r
-<HR SIZE="4" NOSHADE>\r
-\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="center"><FONT SIZE="+2">\r
-<B>Package</B> <B>compbio.metadata</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<P>\r
-<A NAME="compbio.metadata.JobExecutionException"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
-<B>Class <A HREF="compbio/metadata/JobExecutionException.html" title="class in compbio.metadata">compbio.metadata.JobExecutionException</A> extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang">Exception</A> implements Serializable</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<P>\r
-<B>serialVersionUID: </B>-5477751361755778769L\r
-\r
-<P>\r
-\r
-<P>\r
-<A NAME="compbio.metadata.JobSubmissionException"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
-<B>Class <A HREF="compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">compbio.metadata.JobSubmissionException</A> extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang">Exception</A> implements Serializable</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<P>\r
-<B>serialVersionUID: </B>607986894357895572L\r
-\r
-<P>\r
-\r
-<P>\r
-<A NAME="compbio.metadata.LimitExceededException"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
-<B>Class <A HREF="compbio/metadata/LimitExceededException.html" title="class in compbio.metadata">compbio.metadata.LimitExceededException</A> extends <A HREF="compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A> implements Serializable</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<P>\r
-<B>serialVersionUID: </B>15066952180013505L\r
-\r
-<P>\r
-<A NAME="serializedForm"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
-<TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
-<B>Serialized Fields</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<H3>\r
-numberOfSequencesAllowed</H3>\r
-<PRE>\r
-int <B>numberOfSequencesAllowed</B></PRE>\r
-<DL>\r
-<DL>\r
-</DL>\r
-</DL>\r
-<HR>\r
-<H3>\r
-actualNumberofSequences</H3>\r
-<PRE>\r
-int <B>actualNumberofSequences</B></PRE>\r
-<DL>\r
-<DL>\r
-</DL>\r
-</DL>\r
-<HR>\r
-<H3>\r
-aSequenceLenghtAllowed</H3>\r
-<PRE>\r
-int <B>aSequenceLenghtAllowed</B></PRE>\r
-<DL>\r
-<DL>\r
-</DL>\r
-</DL>\r
-<HR>\r
-<H3>\r
-aSequenceLenghtActual</H3>\r
-<PRE>\r
-int <B>aSequenceLenghtActual</B></PRE>\r
-<DL>\r
-<DL>\r
-</DL>\r
-</DL>\r
-\r
-<P>\r
-<A NAME="compbio.metadata.ResultNotAvailableException"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
-<B>Class <A HREF="compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">compbio.metadata.ResultNotAvailableException</A> extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang">Exception</A> implements Serializable</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<P>\r
-<B>serialVersionUID: </B>-5475613614578761L\r
-\r
-<P>\r
-\r
-<P>\r
-<A NAME="compbio.metadata.UnsupportedRuntimeException"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
-<B>Class <A HREF="compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">compbio.metadata.UnsupportedRuntimeException</A> extends <A HREF="compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A> implements Serializable</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<P>\r
-<B>serialVersionUID: </B>-86624836785110293L\r
-\r
-<P>\r
-\r
-<P>\r
-<A NAME="compbio.metadata.WrongParameterException"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
-<B>Class <A HREF="compbio/metadata/WrongParameterException.html" title="class in compbio.metadata">compbio.metadata.WrongParameterException</A> extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang">Exception</A> implements Serializable</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<P>\r
-<B>serialVersionUID: </B>-547775417557345769L\r
-\r
-<P>\r
-\r
-<P>\r
-<HR>\r
-\r
-\r
-<!-- ======= START OF BOTTOM NAVBAR ====== -->\r
-<A NAME="navbar_bottom"><!-- --></A>\r
-<A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
-<TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
-<TR>\r
-<TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
-<A NAME="navbar_bottom_firstrow"><!-- --></A>\r
-<TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
- <TR ALIGN="center" VALIGN="top">\r
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- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Package</FONT> </TD>\r
- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT> </TD>\r
- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Use</FONT> </TD>\r
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- <SCRIPT type="text/javascript">\r
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- if(window==top) {\r
- document.writeln('<A HREF="allclasses-noframe.html"><B>All Classes</B></A>');\r
- }\r
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