JWS-116 New fixes to the documentation pages. Various fixes to the content, as well...

[jabaws.git] / website / docs / v_2_2_0 / getting_started.html

diff --git a/website/docs/v_2_2_0/getting_started.html b/website/docs/v_2_2_0/getting_started.html
index 4fbe3c0..23b2ff0 100644 (file)
--- a/website/docs/v_2_2_0/getting_started.html
+++ b/website/docs/v_2_2_0/getting_started.html
@@ -162,7 +162,8 @@
       <li class="wy-breadcrumbs-aside">
         
             
-            <a href="_sources/getting_started.rst.txt" rel="nofollow"> View page source</a>
+            <!-- <a href="_sources/getting_started.rst.txt" rel="nofollow"> View page source</a> -->
+            <a href="../../">Return to the JABAWS homepage</a>
           
         
       </li>
@@ -177,7 +178,7 @@
             
   <div class="section" id="getting-started">
 <h1>Getting Started<a class="headerlink" href="#getting-started" title="Permalink to this headline">¶</a></h1>
-<p>JABAWS stands for <em>JAva Bioinformatics Analysis Web Services</em>. As the name suggests, JABAWS is a collection of web services for bioinformatics, and currently provides services that make it easy to access well-known multiple sequence alignment and protein disorder prediction programs (see the list of <a class="reference external" href="included_tools.html">currently supported programs</a>). Future versions of JABAWS will incorporate other tools.</p>
+<p><em>JABAWS</em> is a collection of web services for bioinformatics, and currently provides services that make it easy to access well-known multiple sequence alignment and protein disorder prediction programs (see the list of <a class="reference external" href="included_tools.html">currently supported programs</a>). Future versions of JABAWS will incorporate other tools.</p>
 <p>JABAWS consists of a server and a client, but unlike most bioinformatics web-service systems, you can download and run both parts on your own computer! If you want a server just for yourself, then download and install the <a class="reference external" href="va.html">JABAWS Virtual Appliance (VA)</a>. It requires no configuration and is simple to install. If you want to install JABAWS for your lab or institution then download the <a class="reference external" href="war.html">JABAWS Web Application aRchive (WAR)</a>. It is slightly more complicated to configure but is very straightforward too. Finally, if you want to script against any version of JABAWS or are interested in writing your own client, the <a class="reference external" href="client.html">JABAWS Command Line Interface (CLI)</a> client is what you need.</p>
 <hr class="docutils" />
 <div class="section" id="jabaws-benefits">
@@ -222,7 +223,7 @@
 </li>
 <li><p class="first">Provided that you have the Java ready to run, you can get command line help by changing to the directory where you downloaded the client jar, and typing:</p>
 <blockquote>
-<div><div class="code bash highlight-default"><div class="highlight"><pre><span></span><span class="n">java</span> <span class="o">-</span><span class="n">jar</span> <span class="n">jaba</span><span class="o">-</span><span class="n">client</span><span class="o">.</span><span class="n">jar</span>
+<div><div class="code bash highlight-default"><div class="highlight"><pre><span></span><span class="n">java</span> <span class="o">-</span><span class="n">jar</span> <span class="n">jabaws</span><span class="o">-</span><span class="n">full</span><span class="o">-</span><span class="n">client</span><span class="o">-</span><span class="mf">2.2</span><span class="o">.</span><span class="mf">0.</span><span class="n">jar</span>
 </pre></div>
 </div>
 </div></blockquote>
@@ -325,7 +326,7 @@
 
   <div role="contentinfo">
     <p><a href="../../">JABAWS 2.2</a>
-        &copy; Copyright 2017, Peter Troshin, Alexander Sherstnev, Jim Procter, Alexey Drozdetskiy, Daniel Barton, Suzanne Duce, Fábio Madeira and Geoff Barton.
+        &copy; Copyright 2017, Peter Troshin, Alexander Sherstnev, Jim Procter, Daniel Barton, Fábio Madeira, Alexey Drozdetskiy, Suzanne Duce and Geoff Barton.
 
     </p>
   </div>